CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROMS (Ribosome-recycling factor OS=Prochlorococcus marinus (strain AS9601) GN=frr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.737e-36
Identity = 74/142 (52.11%), Postives = 108/142 (76.06%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            +N  +LD++ VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D  S++QK+TD+Y+  I++
Sbjct:   29 ANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIET 170          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SYNS9 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9902) GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 72/141 (51.06%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S L +IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D    +QK+ D+++ +++
Sbjct:   29 ANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQIQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSVQKVLDKFIVELE 169          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SYNPX (Ribosome-recycling factor OS=Synechococcus sp. (strain WH8102) GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 72/141 (51.06%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D    +QK  D+++ +++
Sbjct:   29 ANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDAVQKTLDKFIAELE 169          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_THETN (Ribosome-recycling factor OS=Thermoanaerobacter tengcongensis GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 73/143 (51.05%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD+I V YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL LP+LT ERRKEL K+V K+AEE ++AVR IRRDA    +K++K+ ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:   31 ANPALLDRITVNYYGTPTPLNRLATITAPEPRVLVVQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKKAEEARIAVRQIRRDANDLVKKMEKDGEISEDERKRREEEIQKLTDKYIKEIDKM 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROM5 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9515) GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 76/142 (53.52%), Postives = 105/142 (73.94%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            +N  +LD+I VEYYG+   +KS+A I T DS ++ IQP+D S L++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S D  +D   ++QK TD+Y+  I++
Sbjct:   29 ANASLLDRISVEYYGAETPIKSLASIATVDSQTISIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISIDESRDNQLEIQKFTDKYISLIET 170          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRZT (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRZJ (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain JJA) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRPJ (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRPI (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRP7 (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain 70585) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROMS1.737e-3652.11Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_SYNS92.269e-3651.06Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNPX2.269e-3651.06Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_THETN2.964e-3651.05Ribosome-recycling factor OS=Thermoanaerobacter te... [more]
RRF_PROM52.964e-3653.52Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_STRZT3.871e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRZJ3.871e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPJ3.871e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPI3.871e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRP73.871e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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