CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRP4 (Ribosome-recycling factor OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROMA (Ribosome-recycling factor OS=Prochlorococcus marinus GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 71/141 (50.35%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD++ VEYYG+   LKS+A I+TPDS +L IQP+D  SL  IEKAI  SDLG TPNNDG++IR+ +P LT ERRK+  K+ +K AEE K+++RNIRRDA++  +  +K+ + SED  +D    +QK+T++Y+ +I+
Sbjct:   29 ANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLAIQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKISLRNIRRDAIEKIKGSEKDGEFSEDQSRDQQDSIQKITNKYINEIE 169          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DESVV (Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 69/137 (50.36%), Postives = 101/137 (73.72%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            ++D I+V+YYG+P  +  +A +  PDS  + IQP+D+++   IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++    D+QKLTD ++ K D
Sbjct:   37 LVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTD 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DESVH (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 69/137 (50.36%), Postives = 101/137 (73.72%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            ++D I+V+YYG+P  +  +A +  PDS  + IQP+D+++   IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++    D+QKLTD ++ K D
Sbjct:   37 LVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTD 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROM2 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9215) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 73/142 (51.41%), Postives = 108/142 (76.06%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            +N  +LD++ V+YYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D  S++QK+TD+Y+  I++
Sbjct:   29 ANASLLDRVSVDYYGAETPIKSLATISTIDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIET 170          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOTE (Ribosome-recycling factor OS=Clostridium tetani GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 71/143 (49.65%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLDKIE EYYG+   L  +A I+ P++  L IQP+DKSSLK+IEKAI+ SDLG+ PNNDG +IRL +P+LT E R+ + K V K  E+ K+A+R++RRD     + L+ +  +SED++K    ++QK+TD Y+KK+D +
Sbjct:   32 ANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPWDKSSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKKYGEDTKIAIRSVRRDGNDKIKDLKSD--MSEDDIKKAEEEIQKITDNYVKKVDEM 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOK5 (Ribosome-recycling factor OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 72/146 (49.32%), Postives = 105/146 (71.92%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +NP +LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K  E+ KVA+R IRR+    ++ L+K+  +SED +K     +QK TD ++K ID+I ++
Sbjct:   32 ANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGIRRECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEK 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOK1 (Ribosome-recycling factor OS=Clostridium kluyveri (strain NBRC 12016) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 72/146 (49.32%), Postives = 105/146 (71.92%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +NP +LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K  E+ KVA+R IRR+    ++ L+K+  +SED +K     +QK TD ++K ID+I ++
Sbjct:   32 ANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGIRRECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEK 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRPS (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain CGSP14) GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.602e-36
Identity = 73/143 (51.05%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SD+G+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRPN (Ribosome-recycling factor OS=Streptococcus pneumoniae GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.602e-36
Identity = 73/143 (51.05%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SD+G+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRP43.871e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_PROMA3.871e-3650.35Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_DESVV3.871e-3650.36Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_DESVH3.871e-3650.36Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_PROM25.055e-3651.41Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_CLOTE5.055e-3649.65Ribosome-recycling factor OS=Clostridium tetani GN... [more]
RRF_CLOK55.055e-3649.32Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_CLOK15.055e-3649.32Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_STRPS6.602e-3651.05Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPN6.602e-3651.05Ribosome-recycling factor OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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