CF832549
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 38/69 (55.07%), Postives = 57/69 (82.61%), Query Frame = -1 Query: 299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505 AS LA+A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ Sbjct: 542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQ 610
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15 Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = -1 Query: 278 MMQPQMLPRGR-VFRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASA--------LANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQ 682 M PQ +P G + +P + +M G GG P G+ AA R AP + P+ G +A A +P+QQ+ +LGENL+P ++ L+PD A K+TGMLLEMD E+++LLE AL AKV EAM V + QQ Sbjct: 617 MPVPQGMPGGPGMAGFPPNGRPQNGNMGGRGG--PGRGGNFAAG--RGAPPAGPLAAGGELNASSLLQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEAMAVYDEYVKSQQ 756
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15 Identity = 57/153 (37.25%), Postives = 78/153 (50.98%), Query Frame = -1 Query: 230 LPRGRVFRYPSGRGMPDVSMPGVGGMLPIP-YGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQ---QAGNPADQLASLSLNDN 664 +P G+ R P G G P GG P G AA P P G A L+ P QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD E+L LLE EAL+AKV EA+ E ++N + + ++ P + A + +N Sbjct: 600 MPMGQGIRGP-GYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAESAKPKEDAAETATEEN 751
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15 Identity = 58/152 (38.16%), Postives = 76/152 (50.00%), Query Frame = -1 Query: 305 NQQHVPMMQP-QMLPRGRVFRYPSGRGMPDVSMPGV------------GGMLPIPYGDMAAMPLRDAPISQPVPIGALA-------SALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 700 NQQ++ + Q Q GR GRG P MPG+ GG P G A R P P G S L+ A+P QQ+ MLGE LYP + +++P+ A K+TGMLLEMD +E+++L AL+AKV EAM V Sbjct: 572 NQQYMQLAQAAQQAMGGR-----GGRGGPMPGMPGMPQAQIAGGPGIRGGQGGFPQGGRGAPGGRGQPPMPGFPQGGRPGGPGVDMSVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKVDEAMSV 718
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.053e-15 Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = -1 Query: 257 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 505 AS LA A ++Q+ +LGE +YPL+ ++ P A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+ ++ A A Q Sbjct: 544 ASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKESAPKSAPQ 626
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.293e-15 Identity = 57/139 (41.01%), Postives = 74/139 (53.24%), Query Frame = -1 Query: 263 LPRGRVFRYPSGRGMPDVSMPGVGGMLPIPYG-DMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPA 664 +P G+ R P G G +P G M P G A P P G A +LA A QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE EAL+AKV EA+ E ++N + +A A Sbjct: 600 MPMGQGMRGP-GYGQGRGGVPVQGQMRPGQGGRGQNAQPAAGRGEEAPAA-GLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSVYDEYMKNKGTEGEAAGEA 736
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14 Identity = 61/167 (36.53%), Postives = 82/167 (49.10%), Query Frame = -1 Query: 263 NQQHVPMMQPQMLPRGRVF-RYPSGRGMP-DVSMPGVGGM----LPIPYG-------------DMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ--QAGNPA 700 N + P M P GR + PSG+GMP +V G GG +P+ G A+ RD S P G L A P QQ+ MLGE +YP ++ +P+ A K+TGMLLEMD E+L L++ ALKAKV EA+ V + + +G PA Sbjct: 586 NGLNYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQAGRGQGAPAQAVGQRDENAS---PNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTVYDEYVKNKGGDSGEPA 749
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.793e-13 Identity = 51/155 (32.90%), Postives = 71/155 (45.81%), Query Frame = -1 Query: 260 QHVPMMQPQMLPRGRVFRYPSGRGMPDVSMPGVGGMLPIPYGDM-------AAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ---QQQAGNPAD 694 Q +P PQ L G P+ G P P GG P G+ A P+ AP A P+ Q+ ++GENL+P ++ ++P A K+TGMLLEMD E+++L E AL KV EA+ V + QQ PA+ Sbjct: 597 QGIPAGIPQGLQGG-----PAVPGYPPAGRPQNGGGRGTPRGNANFMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAVYDEYLKTQGQQPTQQPAE 746
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13 Identity = 52/147 (35.37%), Postives = 74/147 (50.34%), Query Frame = -1 Query: 263 GRVFRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPL--RDAPISQPVPIGALASALANASPE--------------QQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPA 655 G R P G+P MPG G+ P P R A + P GA A A +PE QQ+ +LGE ++P ++ + P+ A K+TGMLLEMD TE++ L+E+ AL++KV EA+ V + +QQ G A Sbjct: 604 GPAGRGPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGR-APAGAPAGARGAGAPEGLQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDGEGA 749
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12 Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = -1 Query: 299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505 AS LA A +Q+ M+GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+ Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ 601 The following BLAST results are available for this feature:
BLAST of CF832549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832549 ID=CF832549; Name=CF832549; organism=Citrus sinensis; type=EST; length=790bpback to top |