CF832549

Overview
NameCF832549
Unique NameCF832549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2803 contig Csv1_Contig2803:2..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 38/69 (55.07%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL+
Sbjct:  542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQ 610          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = -1
Query:  278 MMQPQMLPRGR-VFRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASA--------LANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQ 682
            M  PQ +P G  +  +P      + +M G GG  P   G+ AA   R AP + P+  G   +A         A  +P+QQ+ +LGENL+P ++ L+PD A K+TGMLLEMD  E+++LLE   AL AKV EAM V     + QQ
Sbjct:  617 MPVPQGMPGGPGMAGFPPNGRPQNGNMGGRGG--PGRGGNFAAG--RGAPPAGPLAAGGELNASSLLQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEAMAVYDEYVKSQQ 756          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 57/153 (37.25%), Postives = 78/153 (50.98%), Query Frame = -1
Query:  230 LPRGRVFRYPSGRGMPDVSMPGVGGMLPIP-YGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQ---QAGNPADQLASLSLNDN 664
            +P G+  R P G G      P  GG  P    G  AA P        P   G  A  L+   P QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD  E+L LLE  EAL+AKV EA+    E ++N  + +   ++  P +  A  +  +N
Sbjct:  600 MPMGQGIRGP-GYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAESAKPKEDAAETATEEN 751          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 58/152 (38.16%), Postives = 76/152 (50.00%), Query Frame = -1
Query:  305 NQQHVPMMQP-QMLPRGRVFRYPSGRGMPDVSMPGV------------GGMLPIPYGDMAAMPLRDAPISQPVPIGALA-------SALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 700
            NQQ++ + Q  Q    GR      GRG P   MPG+            GG    P G   A   R  P     P G          S L+ A+P QQ+ MLGE LYP + +++P+ A K+TGMLLEMD +E+++L     AL+AKV EAM V
Sbjct:  572 NQQYMQLAQAAQQAMGGR-----GGRGGPMPGMPGMPQAQIAGGPGIRGGQGGFPQGGRGAPGGRGQPPMPGFPQGGRPGGPGVDMSVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKVDEAMSV 718          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.053e-15
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  257 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 505
            AS LA A  ++Q+ +LGE +YPL+ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+    ++ A   A Q
Sbjct:  544 ASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKESAPKSAPQ 626          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.293e-15
Identity = 57/139 (41.01%), Postives = 74/139 (53.24%), Query Frame = -1
Query:  263 LPRGRVFRYPSGRGMPDVSMPGVGGMLPIPYG-DMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPA 664
            +P G+  R P G G     +P  G M P   G    A P        P   G  A +LA A   QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  EAL+AKV EA+    E ++N   + +A   A
Sbjct:  600 MPMGQGMRGP-GYGQGRGGVPVQGQMRPGQGGRGQNAQPAAGRGEEAPAA-GLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSVYDEYMKNKGTEGEAAGEA 736          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14
Identity = 61/167 (36.53%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  263 NQQHVPMMQPQMLPRGRVF-RYPSGRGMP-DVSMPGVGGM----LPIPYG-------------DMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ--QAGNPA 700
            N  + P M     P GR   + PSG+GMP +V   G GG     +P+  G                A+  RD   S   P G     L  A P QQ+ MLGE +YP ++  +P+ A K+TGMLLEMD  E+L L++   ALKAKV EA+ V     + +   +G PA
Sbjct:  586 NGLNYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQAGRGQGAPAQAVGQRDENAS---PNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTVYDEYVKNKGGDSGEPA 749          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.793e-13
Identity = 51/155 (32.90%), Postives = 71/155 (45.81%), Query Frame = -1
Query:  260 QHVPMMQPQMLPRGRVFRYPSGRGMPDVSMPGVGGMLPIPYGDM-------AAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ---QQQAGNPAD 694
            Q +P   PQ L  G     P+  G P    P  GG    P G+         A P+  AP          A       P+ Q+ ++GENL+P ++ ++P  A K+TGMLLEMD  E+++L E   AL  KV EA+ V     +   QQ    PA+
Sbjct:  597 QGIPAGIPQGLQGG-----PAVPGYPPAGRPQNGGGRGTPRGNANFMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAVYDEYLKTQGQQPTQQPAE 746          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13
Identity = 52/147 (35.37%), Postives = 74/147 (50.34%), Query Frame = -1
Query:  263 GRVFRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPL--RDAPISQPVPIGALASALANASPE--------------QQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPA 655
            G   R P   G+P   MPG  G+   P       P   R A   +  P GA A A    +PE              QQ+ +LGE ++P ++ + P+ A K+TGMLLEMD TE++ L+E+  AL++KV EA+ V  +  +QQ  G  A
Sbjct:  604 GPAGRGPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGR-APAGAPAGARGAGAPEGLQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDGEGA 749          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = -1
Query:  299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505
            AS LA A   +Q+ M+GE LYPL+  +    A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+
Sbjct:  533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ 601          
The following BLAST results are available for this feature:
BLAST of CF832549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABP3_HUMAN1.393e-1555.07Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP_CHAGB1.819e-1540.28Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU1.819e-1537.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PHANO3.103e-1538.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABB_XENLA4.053e-1548.19Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_ASPTN5.293e-1541.01Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM3.431e-1436.53Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEUCR3.793e-1332.90Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR8.450e-1335.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1L_HUMAN1.883e-1252.17Polyadenylate-binding protein 1-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832549 ID=CF832549; Name=CF832549; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATACCCCTT
GAAACTCTCAACAGTTAAACCCAAAAAAATAAAAATACAAATAAAAACCA
AAACCAAAACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTAT
AACCGTAACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAA
ATACTGCAGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGA
GGCTAGTTGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCC
TCAGAACCTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGAC
TCGAGCAAGTGCAAAACCTCAGTCTGATCCATCTCCAAAAGCATTCCCGT
AACCTTAGCTGCAGCATCAGGCTCCAGCTGTTCTACAAGTGGGTAGAGAT
TCTCTCCCAGCATCGTCCTCTGCTGCTCAGGAGAAGCATTTGCAAGGGCA
GAAGCCAAAGCCCCAATGGGAACTGGCTGTGAAATAGGGGCATCACGCAG
CGGCATAGCAGCCATGTCACCATATGGAATAGGTAGCATCCCTCCGACAC
CAGGCATGGAAACATCTGGCATGCCACGGCCTGACGGGTAGCGGAAGACA
CGCCCCCTTGGAAGCATCTGTGGCTGCATCATTGGAACATGCTGCTGGTT
CTGCTGCATGCCTGCTGCCCGTCTGCCACTAGGACGCTGACCCTGCTGCC
CTGGCTGAGCTATCGGCACAAAAGAAATTTTGCATGGGAC
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