CF832550 | Citrus Genome Database

Overview


Name	CF832550
Unique Name	CF832550
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	585

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 109/171 (63.74%), Postives = 139/171 (81.29%), Query Frame = 1

Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +A  +   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173

HSP 2 Score: 119.013 bits (297), Expect = 1.727e-26
Identity = 65/170 (38.24%), Postives = 101/170 (59.41%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L D F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 3 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 72/200 (36.00%), Postives = 109/200 (54.50%), Query Frame = 1

Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R       GA A +F  T++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSRKEREAELGARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

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BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 109/171 (63.74%), Postives = 139/171 (81.29%), Query Frame = 1

Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +A  +   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173

HSP 2 Score: 119.013 bits (297), Expect = 1.727e-26
Identity = 65/170 (38.24%), Postives = 101/170 (59.41%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L D F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 3 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 72/200 (36.00%), Postives = 109/200 (54.50%), Query Frame = 1

Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R       GA A +F  T++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSRKEREAELGARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

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BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.071e-60
Identity = 108/172 (62.79%), Postives = 140/172 (81.40%), Query Frame = 1

Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            +A+Q  + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH +
Sbjct:   45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 216

HSP 2 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 52/170 (30.59%), Postives = 97/170 (57.06%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKN+D+ +  +     F  FG I S  ++ D  G+S+G+GFV F   +SAQ A++++N   +  +++YVG
Sbjct:  138 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVG 306

HSP 3 Score: 82.0333 bits (201), Expect = 2.339e-15
Identity = 58/224 (25.89%), Postives = 97/224 (43.30%), Query Frame = 1

Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-----------------------------------------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++Y+ +++  VTD +   +F + G++ S  + RD    +S G+G+VNFS    A  A++ +N   + G+ +   R    H R+  LRK                N+++KNL   +D + L + FS FG I S KV  D                                               + G+SKG+GFV F + + A KA+ ++N  ++N K +YV
Sbjct:  233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 455

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BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 9.071e-60
Identity = 110/165 (66.67%), Postives = 140/165 (84.85%), Query Frame = 1

Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            +SLYVGDL+ +V +S L DLFNQ+  V ++RVCRDL T RSLGY YVNF+N ++A+RA+E LN+ P+  +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKVA D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+
Sbjct:   45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208

HSP 2 Score: 106.686 bits (265), Expect = 8.868e-23
Identity = 59/170 (34.71%), Postives = 97/170 (57.06%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+A++ +  LY+ F+  G ++S +V  D+   RS GYG+V F   + A  A++ LN   LN K + V +  R     +S +G      N+++KNL K I    L  TF  +G+I S  V  D +G S+ +GFV F + E+A  A+EK+NG+ L +  +YVG
Sbjct:  130 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVG 298

HSP 3 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 59/177 (33.33%), Postives = 96/177 (54.24%), Query Frame = 1

Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++YV +L   +TD +L   F + G + S  V +D S   S  +G+VNF + + AA A+E +N   L    + V      S R+  LR            K    N+++KNLD +++ + L + FS +GN+ SCKV  +  G S+G+GFV + N E A  A++++NG ++  K +YV
Sbjct:  225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 400

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BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.547e-59
Identity = 108/171 (63.16%), Postives = 139/171 (81.29%), Query Frame = 1

Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +A  +   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173

HSP 2 Score: 108.227 bits (269), Expect = 3.048e-23
Identity = 59/170 (34.71%), Postives = 99/170 (58.24%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA++ +N   LN + + V  +  R     + GA      N++IKN  + +D + L + F  +G  LS KV TD +G+S+G+GFV F+  E AQKA++ +NG  LN K ++VG
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVG 264

HSP 3 Score: 106.686 bits (265), Expect = 8.868e-23
Identity = 69/200 (34.50%), Postives = 108/200 (54.00%), Query Frame = 1

Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R       GA A +F  T++Y+ +   ++ D +L + F Q G  +SV+V  D    +S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   F+ FG+I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSRKEREAELGARAKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

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BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 108/171 (63.16%), Postives = 138/171 (80.70%), Query Frame = 1

Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +A  +   SLYVGDL  + T++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F
Sbjct:    4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173

HSP 2 Score: 119.013 bits (297), Expect = 1.727e-26
Identity = 65/170 (38.24%), Postives = 101/170 (59.41%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA+E +N   LN + + V  +  R     + GA      N++IKN  + +D + L D F  FG  LS KV TD +G+SKG+GFV F+  E AQKA++++NG  LN KQ+YVG
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264

HSP 3 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 72/200 (36.00%), Postives = 109/200 (54.50%), Query Frame = 1

Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R       GA A +F  T++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I V  + +                 D   R  G  N+++KNLD  ID + L   FS FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSRKEREAELGARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

[Close]

BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.639e-59
Identity = 107/172 (62.21%), Postives = 139/172 (80.81%), Query Frame = 1

Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            + +Q  + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH +
Sbjct:   41 STSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 212

HSP 2 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 53/170 (31.18%), Postives = 97/170 (57.06%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   N++IKNLD+ I  +     F  FG I S  ++ D  G+S+G+GFV +   +SAQ A++++N   +  +++YVG
Sbjct:  134 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVG 302

[Close]

BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 3.447e-59
Identity = 107/171 (62.57%), Postives = 139/171 (81.29%), Query Frame = 1

Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +A  +   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV  D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F
Sbjct:    4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173

HSP 2 Score: 108.612 bits (270), Expect = 2.334e-23
Identity = 59/170 (34.71%), Postives = 99/170 (58.24%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA++ +N   LN + + V  +  R     + GA      N++IKN    ++ + L + F  +G  LS KV TD NG+SKG+GFV F+  E AQKA++++NG  +N K ++VG
Sbjct:   97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVG 264

HSP 3 Score: 104.375 bits (259), Expect = 4.401e-22
Identity = 66/200 (33.00%), Postives = 107/200 (53.50%), Query Frame = 1

Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R       GA A +F  T++Y+ +   ++ D +L ++F + G  +SV+V  D    +S G+G+V+F   ++A +A++ +N   +NGK + V  + +                 D   R  G  N+++KNLD  ID + L   F  FG I S KV  +  G+SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GRFKSRKEREAELGARAKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

[Close]

BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.502e-59
Identity = 104/166 (62.65%), Postives = 139/166 (83.73%), Query Frame = 1

Query:   88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH +
Sbjct:   59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 224

HSP 2 Score: 95.9005 bits (237), Expect = 1.565e-19
Identity = 50/172 (29.07%), Postives = 95/172 (55.23%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+A + +  L+D F   G ++S +V +D     S GYG+V++   + A++A++ +N   LN K + V   H  P           K+   N+++KN++  +  +   + F+ FG + S  +A D  G+S+G+GFV F   E+A +A+++LNG     + +YVG
Sbjct:  146 GAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV--GHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVG 314

[Close]

BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.502e-59
Identity = 105/178 (58.99%), Postives = 141/178 (79.21%), Query Frame = 1

Query:   52 PLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            P    A  +   + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH +
Sbjct:   48 PTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225

HSP 2 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 66/224 (29.46%), Postives = 102/224 (45.54%), Query Frame = 1

Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-----------------------------------------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++YV ++   VTD +   LF + G V S  + RD  T +S G+G+VNF++ ++A++A++ LN    +G+ +   R    H R+  LRKS               N++IKNLD  +D + L   FS FG I S KV  D                                                 G+SKG+GFV F N + A KA+ ++N  ++N+K +YV
Sbjct:  242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYV 465

HSP 3 Score: 86.2705 bits (212), Expect = 1.240e-16
Identity = 49/173 (28.32%), Postives = 92/173 (53.18%), Query Frame = 1

Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+  + +  L+D F   G ++S +V +D     S GYG+V++   + A++A++ +N   LN K + V   H  P           K+   NI++KN++  +        F  +G++ S  +A D   G+S+G+GFV F + E A KA+++LN    + + +YVG
Sbjct:  147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV--GHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVG 316

The following BLAST results are available for this feature:

BLAST of CF832550 vs. ExPASy Swiss-Prot

BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170


Match Name	E-value	Identity	Description
PABP1_HUMAN	6.945e-60	63.74	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	6.945e-60	63.74	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABP_ASPFU	9.071e-60	62.79	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP5_ARATH	9.071e-60	66.67	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABPB_XENLA	1.547e-59	63.16	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]
PABP1_PONAB	2.021e-59	63.16	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP_ASPTN	2.639e-59	62.21	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABPA_XENLA	3.447e-59	62.57	Polyadenylate-binding protein 1-A OS=Xenopus laevi...	[more]
PABP_NEUCR	4.502e-59	62.65	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_MAGGR	4.502e-59	58.99	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC