CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SFPQ_HUMAN (Splicing factor, proline- and glutamine-rich OS=Homo sapiens GN=SFPQ PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 534
            L+VG+L A++T+ +   LF + G+   V +       +  G+G++   +   A  A   L+ TP+ G+ +RV ++        + A  + ++NL   + ++ L + FS FG I    V  D  G+S G G V+F ++ +A+KA E+
Sbjct:  299 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFA--------THAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 40/168 (23.81%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   61 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQS-KGYGFVQFDNEESAQKAIEKLNGML 549
            G A+        ++VG L +N TD  + + ++Q G++  + V RD +T+RS G+G+V FS   E   A++      ++GK +     V    ++ S        +++  + +      L + F+ +G +   ++  D   Q  +G+GFV FD+ +S  + + + + M+
Sbjct:   13 GDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMV 179          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.565e-11
Identity = 44/169 (26.04%), Postives = 85/169 (50.30%), Query Frame = 1
Query:   88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-----SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG---------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552
            T S+++ +L  + T+  L D F      V  +V      +      S+G+G+V F   ++A   +  ++ T ++G  I++  SHR  S  +SG         +G I +KNL      K + + F++FG + S +V    +  ++G+ FV+F   + A+ A+++L+G+ L
Sbjct:  662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQAS--QSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHL 828          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 41/170 (24.12%), Postives = 81/170 (47.65%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK---------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQS-KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            +YVG +   + +  +   F   G + S+ +  D  T++  G+ +V +   + A  ALE +N   + G+ I+V      P  ++              I++ ++   +  + +   F AFG IL CK+A   +  + KGYGF+++ N+++  +AI  +N   L  + + VG
Sbjct:  132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVG 301          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PSPC1_RAT (Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 41/146 (28.08%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 534
            L+VG+L  ++T+     LF + G+   V + RD       G+G++   +   A  A   L+ T L  +P+R+ ++    +L         +KNL   + ++ L   FS FG +    V  D  G++ G GFV+F  +  A+KA+E+
Sbjct:   83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR------GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALT--------VKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 214          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PSPC1_MOUSE (Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 41/146 (28.08%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 534
            L+VG+L  ++T+     LF + G+   V + RD       G+G++   +   A  A   L+ T L  +P+R+ ++    +L         +KNL   + ++ L   FS FG +    V  D  G++ G GFV+F  +  A+KA+E+
Sbjct:   83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR------GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALT--------VKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 214          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PSPC1_HUMAN (Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 41/146 (28.08%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 534
            L+VG+L  ++T+     LF + G+   V + RD       G+G++   +   A  A   L+ T L  +P+R+ ++    +L         +KNL   + ++ L   FS FG +    V  D  G++ G GFV+F  +  A+KA+E+
Sbjct:   84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR------GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALT--------VKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 215          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PSPC1_BOVIN (Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 41/146 (28.08%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 534
            L+VG+L  ++T+     LF + G+   V + RD       G+G++   +   A  A   L+ T L  +P+R+ ++    +L         +KNL   + ++ L   FS FG +    V  D  G++ G GFV+F  +  A+KA+E+
Sbjct:   81 LFVGNLPTDITEDDFKRLFERYGEPSEVFINRDR------GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALT--------VKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 212          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PSPC1_CHICK (Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 41/146 (28.08%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 534
            L+VG+L  ++T+     LF + G+   V + RD       G+G++   +   A  A   L+ T L  +P+R+ ++    +L         +KNL   + ++ L   FS FG +    V  D  G++ G GFV+F  +  A+KA+E+
Sbjct:   83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR------GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALT--------VKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVEFAAKPPARKALER 214          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: CELF4_MACFA (CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicularis GN=BRUNOL4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 41/152 (26.97%), Postives = 70/152 (46.05%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN---FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            L++G +  N+ +  L  LF + G++  + V +D  T    G  ++ +   + A +A   L+     P   +PI+V    +       G   +F+  L+K      +   F AFGNI  C +    +G SKG  FV++ +   AQ AI  L+G
Sbjct:   56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV----KPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHG 203          
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
SFPQ_HUMAN4.565e-1128.08Splicing factor, proline- and glutamine-rich OS=Ho... [more]
ROA1_CAEEL4.565e-1123.81Heterogeneous nuclear ribonucleoprotein A1 OS=Caen... [more]
MRD1_YEAST4.565e-1126.04Multiple RNA-binding domain-containing protein 1 O... [more]
PUF68_DROME5.962e-1124.12Poly(U)-binding-splicing factor half pint OS=Droso... [more]
PSPC1_RAT5.962e-1128.08Paraspeckle component 1 OS=Rattus norvegicus GN=Ps... [more]
PSPC1_MOUSE5.962e-1128.08Paraspeckle component 1 OS=Mus musculus GN=Pspc1 P... [more]
PSPC1_HUMAN5.962e-1128.08Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 P... [more]
PSPC1_BOVIN5.962e-1128.08Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=... [more]
PSPC1_CHICK7.787e-1128.08Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 ... [more]
CELF4_MACFA7.787e-1126.97CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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