CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.880e-59
Identity = 105/166 (63.25%), Postives = 137/166 (82.53%), Query Frame = 1
Query:   88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+AQ AI+ +NGMLLNDK+V+VGH +
Sbjct:   54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHI 219          

HSP 2 Score: 89.7373 bits (221), Expect = 1.122e-17
Identity = 51/171 (29.82%), Postives = 95/171 (55.56%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+  + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  + +D   +    K+   N+++KN+D+    +   D F  FG I S  +A D  +G+S+G+GFV F + ++A  A+E LN      +++YVG
Sbjct:  141 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVG 310          

HSP 3 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 60/230 (26.09%), Postives = 99/230 (43.04%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQS-----------------------------------------------------KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++YV +++ + T+ +  DLF + G++ S  + RD  + +S G+G+VNF++   AA A+E LN     G+ +   R    H R+  LRK                N++IKNL   ID + L + FS++G I S KV  D   +S                                                     KG+GFV F + + A KA+ ++N  +++ K +YV
Sbjct:  236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYV 465          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.003e-58
Identity = 106/179 (59.22%), Postives = 143/179 (79.89%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            TP      A+Q  + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD  TRRSLGY YVN++++++  +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLN+K+V+VGH +
Sbjct:   35 TPTTAAQQAHQ-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212          

HSP 2 Score: 88.5817 bits (218), Expect = 2.499e-17
Identity = 50/172 (29.07%), Postives = 91/172 (52.91%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLR--------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+  + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K  +V   H  P           K+   NI++KN+D  +  +   + F   G+I S  +A D  G+S+G+GFV +   E+A  A++ LN +    +++YVG
Sbjct:  134 GQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVG 302          

HSP 3 Score: 78.9518 bits (193), Expect = 1.980e-14
Identity = 61/230 (26.52%), Postives = 99/230 (43.04%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKV----------------------------------ATDLNGQ-------------------SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++YV +++ +VTD    +LF + G + S  + RD    +S G+G+VN+   + AA A++ LN     G+ +   R    H R+  LRK                N++IKNL+  +D + L D F+ FG I S KV                                  +++ NG+                   SKG+GFV F N + A KA+ ++N  ++  K +YV
Sbjct:  229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYV 457          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.310e-58
Identity = 107/179 (59.78%), Postives = 140/179 (78.21%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            T +   A  +Q  + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN+++     RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D  G SKGYGFV ++  E+A  AI+ +NGMLLNDK+V+VGH +
Sbjct:   28 TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 206          

HSP 2 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 54/170 (31.76%), Postives = 97/170 (57.06%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L++ + +  L+D F   G ++S +V +D     S GYG+V++  A+ A  A++ +N   LN K + V +  S +D   +    K+   NI+IKN+D  ++ +     F  FG I S  ++ D  G+S+G+GFV F   ESAQ A+E++N   +  +++YVG
Sbjct:  128 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVG 296          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 1.711e-58
Identity = 107/164 (65.24%), Postives = 133/164 (81.10%), Query Frame = 1
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            SLYVGDL  +V +S L+D F+  G V+S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  +  KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVATD  G SKGYGFV F+ EE+A  +I+K+NGMLLN K+VYVG F+
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166          

HSP 2 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 63/200 (31.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN-GKPIRVMYSH----RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            G+F  R       G  A  F  T++YV +   +  D +L + F   G++ S +V       +S G+G+V F   + A  A++ LN   +  GK + V  +     R   L++                N+++KNLD  ID   L   FS +GNI S KV TD  G+SKG+GFV F+    A  A+ +LNG ++  K +YV
Sbjct:  163 GKFIPRKEREKELGEKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSK-EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYV 359          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.918e-58
Identity = 105/171 (61.40%), Postives = 138/171 (80.70%), Query Frame = 1
Query:   64 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G+  +Q    SLYVG+L+ +VT++ L+++FN +G V SVRVCRD  TRRSLGY YVNF N  +  RALE LN++P+  +P R+M+S RDP+LRK+GAGNI+IKNLD AID+KALHDTFSAFG ILSCK+ATD  G S+G+GFV +++ ESA+ AI+ +NGMLLNDK+V+VG
Sbjct:   37 GSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVG 207          

HSP 2 Score: 85.5001 bits (210), Expect = 2.116e-16
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---------------RVMY-SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++++ +L   +T+++  +L N+ G+  SV +  +    +  G+G+V++     A +A++ L+ T   G  +               R  Y + R   L K    N++IKNLD  ID   L   F+  G I S KV  D  G+SKG+GFV + + E A KA+ ++N  L+  K +YV
Sbjct:  227 TNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTN-DEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYV 402          

HSP 3 Score: 79.7221 bits (195), Expect = 1.161e-14
Identity = 48/170 (28.24%), Postives = 88/170 (51.76%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----RVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++Y+ +L+  + +  L+D F+  GQ++S ++  D     S G+G+V++ +A+ A  A++ +N   LN K +     V  S R  S   +K+   N+FIKNL   I      +  + FG   S  ++T+  G+  G+GFV +   + A KAI+ L+       +++ G
Sbjct:  132 GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAG 300          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.490e-58
Identity = 103/178 (57.87%), Postives = 141/178 (79.21%), Query Frame = 1
Query:   52 PLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            P    A  +   + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN+++  +  +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +N MLLN+K+VYVG+ +
Sbjct:   52 PTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHI 229          

HSP 2 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 53/170 (31.18%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS--HRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+  + +  L+D F   G ++S +V +D     S GYG+V++   + AA+A++ +N   LN K + V Y    +D   +    K+   NI++KN+      +   D F+ +G++ S  +A D  G+S+G+GFV F   E A KA+E+LNG     + +YVG
Sbjct:  151 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVG 319          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.226e-57
Identity = 101/163 (61.96%), Postives = 135/163 (82.82%), Query Frame = 1
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSLGY Y+NF    +A RAL+ +NF  + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+DTFSAFGNILSCKV  D +G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173          

HSP 2 Score: 115.161 bits (287), Expect = 2.493e-25
Identity = 62/170 (36.47%), Postives = 100/170 (58.82%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLRKSGA----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LYD F+  G ++S +V  D     S GYG+V+F   + A RA++ +N   LN + + V +  S R+  L          N++IKN  + +D K L + FSAFGN LS KV  D  G+S+G+GFV + N E AQKA+ ++NG  +N + +YVG
Sbjct:   97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264          

HSP 3 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 67/199 (33.67%), Postives = 107/199 (53.77%), Query Frame = 1
Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            G FK R    L  GA   +F  T++Y+ +   ++ D +L ++F+  G  +SV+V  D  T RS G+G+VN+ N +EA +A+  +N   +NG+ I V  + +                   + +    N+++KNLD  ID   L   FS +G I S KV T+  G SKG+GFV F + E A KA+ ++NG +++ K +YV
Sbjct:  171 GHFKSRRERELEYGAKVMEF--TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.503e-57
Identity = 103/165 (62.42%), Postives = 132/165 (80.00%), Query Frame = 1
Query:   88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            ++SLYVGDL   V++  L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ N  +A RAL+ LN TP+ GK  R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCKV TD    SKG+GFV ++ +ESA KAI K+NGM++N ++V+VG F
Sbjct:    9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPF 173          

HSP 2 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 54/171 (31.58%), Postives = 91/171 (53.22%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH----RDPSLR-----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T+++  +L  +V   QL +L  Q G++ ++ +  D    +S G+G+ NF +A+ A   +E  N    +GKPI    +     R+  L+     K    N++IKN+D +ID+  L + FS FG I S  V  D     SKG+GFV +   + A +A+ ++NG ++  K +YV
Sbjct:  188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357          

HSP 3 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 46/169 (27.22%), Postives = 86/169 (50.89%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK-----PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+  +    LYD F+  G ++S +V  D     S G+G+V++   + A +A+  +N   +NG+     P +       P+  K    N+F KNL + +    L +    +G I +  +  D  G+SKG+GF  F++ E+A+  +E  NG + + K +Y G
Sbjct:   96 GVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFT--NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAG 261          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.226e-56
Identity = 103/172 (59.88%), Postives = 137/172 (79.65%), Query Frame = 1
Query:   67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            A+ + +   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSLGY Y+NF    +A RAL+ +NF  L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FGNILSCKVA D +G S+G+GFV F+  E+AQ+AI  +NGMLLND++V+VGHF
Sbjct:    3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHF 173          

HSP 2 Score: 110.538 bits (275), Expect = 6.141e-24
Identity = 72/202 (35.64%), Postives = 111/202 (54.95%), Query Frame = 1
Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-------------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            G FK R       GA A +F  T++YV +L  +V +  L DLF+Q G+++SV+V RD ++  S  +G+VNF   +EA +A+  +N   ++G   R++Y+ R                      LR+    N+++KNLD +ID   L   FS +G I S KV T+  G SKG+GFV F + E A KA+ ++NG ++  K +YV
Sbjct:  171 GHFKSRREREAELGARALEF--TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365          

HSP 3 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 57/170 (33.53%), Postives = 95/170 (55.88%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +LE ++ +  LYD F+  G ++S +V  D     S G+G+V+F   + A +A+  +N   LN + + V +      R+  L  R     NI++KNL   +D + L D FS FG +LS KV  D +G S+ +GFV F+  E AQKA+  +NG  ++ + +Y G
Sbjct:   97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG 264          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.091e-56
Identity = 103/172 (59.88%), Postives = 137/172 (79.65%), Query Frame = 1
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            NA+    TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD  TRRSLGY YVNF NA +  RA+E LN++ +  +P R+M+S RDP+LR++G GNIFIKNLD  ID+KALHDTF+AFGNILSCKVAT+  G S GYGFV ++  E+A+ AI+ +NGMLLNDK+VYVGH +
Sbjct:   40 NADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHI 210          

HSP 2 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 55/177 (31.07%), Postives = 100/177 (56.50%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++Y  +++  VTD +   LF + G++ S  + RD    +S G+G+VNF +  EA +A++ L+ +   G+ + V      S R+  LR+S               N+++KN+ ++ D + L + F+ FG I SCK+    +G S+G+GFV +   E A KA+ ++NG +L+++ +YV
Sbjct:  227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRD-EDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYV 402          
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PABP_COCIM5.880e-5963.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PHANO1.003e-5859.22Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI1.310e-5859.78Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME1.711e-5865.24Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP_YARLI2.918e-5861.40Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CHAGB8.490e-5857.87Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR3.226e-5761.96Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PAP1A_DICDI5.503e-5762.42Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PAP1L_HUMAN1.226e-5659.88Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_USTMA2.091e-5659.88Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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