CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.223e-53
Identity = 98/163 (60.12%), Postives = 126/163 (77.30%), Query Frame = 1 
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            SLYVGDL   VT++ LY+ F+  G ++S+R+CRD  TRRSLGY YVN+    +A RALE LNF  + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA D  G  KGYGFV F  +ESA++AI+ +NGM LN ++++VG F
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRF 164
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.223e-53
Identity = 95/163 (58.28%), Postives = 130/163 (79.75%), Query Frame = 1 
Query:   88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  +++SLGY YVN+   ++  +A+E LN+ P+ G+P R+M+S RDPS R+SG GNIFIKNL  AID+KALHDTFSAFG ILSCKVATD  GQSK +GFV ++  E+A+ AIE +NGMLLND++V+VG
Sbjct:   51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG 213

HSP 2 Score: 107.071 bits (266), Expect = 6.790e-23
Identity = 61/177 (34.46%), Postives = 96/177 (54.24%), Query Frame = 1 
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD----------------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++YV +++ N ++     LF+  G++ S+ + +D    +S G+G+VNF + + A +A+E LN   +NG+ I V  + +                   L K    N+F+KNLD  ID + L + F  FG I S KV  D  G+SKG+GFV F   E A KAI ++N  ++N K +YV
Sbjct:  233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408

HSP 3 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 56/175 (32.00%), Postives = 101/175 (57.71%), Query Frame = 1 
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            +A + G  ++++ +L   + +  L+D F+  G+++S +V  D    +S  +G+V++  A+ A  A+E +N   LN + + V    S +D   +    K+   NI++KN+D     ++    FS FG I S  +  D +G+SKG+GFV F++ ESA KA+E+LN   +N +++YVG
Sbjct:  133 SARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVG 306
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 5.330e-52
Identity = 95/163 (58.28%), Postives = 130/163 (79.75%), Query Frame = 1 
Query:   88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  T++SLGY YVNF   ++  +A+E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL  AID+KALHDTF+AFG ILSCKVATD  G SK +GFV ++  E+A+ AIE +NGMLLND++VYVG
Sbjct:   50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVG 212

HSP 2 Score: 102.064 bits (253), Expect = 2.184e-21
Identity = 60/177 (33.90%), Postives = 97/177 (54.80%), Query Frame = 1 
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV---------------MYSH-RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++Y  +++ + ++ +   LF   G++ S+ + +D    +S G+G+VNF N + A +A++ LN   +NG+ I V                Y + R   L K    N+FIKNLD  ID + L + F  FG+I S +V  D  G+SKG+GFV F + E A KAI ++N  ++  K +YV
Sbjct:  232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407

HSP 3 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 53/170 (31.18%), Postives = 93/170 (54.71%), Query Frame = 1 
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L   + +  L+D F   G+++S +V  D     S  +G+V++  A+ A  A+E +N   LN + + V    S +D   +    K+   N++ KN+D     +     F A+G I S  +  D  G+SKG+GFV F+N ESA KA+++LN   +N +++YVG
Sbjct:  137 GDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVG 305
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.455e-51
Identity = 90/160 (56.25%), Postives = 125/160 (78.12%), Query Frame = 1 
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD  T+ SLGY YVN+++ +   +A++ LN+  +NG+P R+M+S RDP++RK G+GNIFIKNL  AID+KALH+TFS FG +LSCKVA D NG S+G+GFV F  E  A+ AIE +NGML+N  +VYV
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYV 210

HSP 2 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 59/177 (33.33%), Postives = 93/177 (52.54%), Query Frame = 1 
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T++YV +++   TD +   LF+Q G++VS  + +D   +   G+G+VNF +   AA+A+E LN      + + V                   +R   L K    N+FIKNLD +ID + L + F+ +G I S +V  D  G SKG+GFV F + E A KA+ + N  ++  K +YV
Sbjct:  231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPK-GFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYV 406

HSP 3 Score: 92.4337 bits (228), Expect = 1.731e-18
Identity = 52/170 (30.59%), Postives = 91/170 (53.53%), Query Frame = 1 
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G+ ++++ +L   + +  L++ F+  G+V+S +V  D     S G+G+V+F    +A  A+E +N   +NG  + V        R   L ++ A   NI++KN+D     +     FS +G I+S  +  D  G+ KG+GFV F +  +A KA+E+LNG     + +YVG
Sbjct:  136 GSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVG 304
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.163e-47
Identity = 95/181 (52.49%), Postives = 133/181 (73.48%), Query Frame = 1 
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585
            +P+G     +Q   TSLYVGDL A+V +  L +LF+++G+  + S+ VCRD +T RSLGY YVNF N  +A RAL+ LN+T ++GKP R+M+S+RDP+ RK+  GNIF+KNL+K +D+  L+DTFS+FGNILSCKV  +  G SKGYG+V F+  +SA+KAIEK+NG L+  K + V  F+
Sbjct:  172 SPIGAYQPPHQL--TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFV 349

HSP 2 Score: 74.7146 bits (182), Expect = 3.734e-13
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 1 
Query:  145 DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL--------EMLNFTP----------LNGKPIRV----MYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            +L N+ G++ S  +  D +  +S G G V F N ++A + L          ++ T           +NGKPI +        R    RK     ++FI N+D++ID   + + F+  G I+  K+  D N ++KG+GF+ F   + AQKA++ LNG     KQ+ V
Sbjct:  378 ELSNRFGEIESCILKND-ANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQV 542
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.962e-46
Identity = 93/170 (54.71%), Postives = 124/170 (72.94%), Query Frame = 1 
Query:   73 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            A ++   SLYVGDL A+VT+  L+  F+ +G V+S+R+CRD  TRRSLGY YVNF    +A +AL+ +NF  + GK IR+M+S RD  LR+SG GN+FIKNLDK+ID+K L++ FSAFG ILS KV +D  G SKGY FV F N+ +A +AIE++NG LL   +V+VG F
Sbjct:    4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 172

HSP 2 Score: 110.923 bits (276), Expect = 4.702e-24
Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 1 
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  LY+ F+  G+++S +V  D   + S GY +V+F N   A RA+E +N   L G  + V        R+  LR   +   N++IKN    +D + L D FS +G  LS KV TD +G+SKG+GFV FD+ E+A+KA+E++NG  +N + ++VG
Sbjct:   96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVG 263

HSP 3 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 63/199 (31.66%), Postives = 110/199 (55.28%), Query Frame = 1 
Query:   25 GRFKLRGRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS----------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            GRFK R        + A++F  T++Y+ +   ++ D +L D+F++ G+ +SV+V  D S+ +S G+G+V+F + + A +A+E +N   +NG+ I V  + +                   +R      ++IKNLD  ID + L + FS+FG+I   KV  +  GQSKG+G + F + E A KA+ ++NG +L  K + +
Sbjct:  170 GRFKNRKDREAELRSKASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45
Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 1 
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180

HSP 2 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1 
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 3 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45
Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 1 
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180

HSP 2 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1 
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 3 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45
Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 1 
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180

HSP 2 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1 
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 3 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373
[Close]
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45
Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 1 
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFIKNLDK+ID++AL   FSAFGNILSCKV  D NG SKGY +V FD+  +A +AI  +NG+ LN++QVYVG F
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180

HSP 2 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1 
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576
            G  ++++ +L+ ++ +  L+ LF+  G ++S +V  D     S GY YV+F +   A RA+  +N   LN + + V        R   +R   ++   N+F+KN+   ID + L + F  +G   S KV  D +G+SKG+GFV+++  E+AQKA+  L+G  ++ K +YVG
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 3 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V +   + A +A+  L+   ++GK + V  +            R   LR           I+IKNLD+ I+ + L + FS+FG+I   KV  ++ GQ KG+G V F + E A KA++++NG ++  K ++V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PAP1M_HUMAN8.223e-5360.12Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_CANAL8.223e-5358.28Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA5.330e-5258.28Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_KLULA3.455e-5156.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1B_DICDI5.163e-4752.49Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]
PAB4L_HUMAN1.962e-4654.71Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABP5_PONPY6.311e-4557.06Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR6.311e-4557.06Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_MACMU6.311e-4557.06Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP5_HYLLA6.311e-4557.06Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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