CF832550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45 Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582 +LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180 HSP 2 Score: 94.3597 bits (233), Expect = 4.554e-19 Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1 Query: 85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576 G ++++ +L+ ++ + L+ LF+ G ++S +V D S GY YV+F + A RA+ +N LN + + V R +R ++ N+F+KN+ ID + L + F +G S KV D +G+SKG+GFV+++ E+AQKA+ L+G ++ K +YVG Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 HSP 3 Score: 84.7297 bits (208), Expect = 3.609e-16 Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573 T+++V ++ ++ D +L +LF + G SV+V RD S + S G+G+V + + A +A+ L+ ++GK + V + R LR I+IKNLD+ I+ + L + FS+FG+I KV ++ GQ KG+G V F + E A KA++++NG ++ K ++V Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.311e-45 Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 582 +LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180 HSP 2 Score: 94.3597 bits (233), Expect = 4.554e-19 Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1 Query: 85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576 G ++++ +L+ ++ + L+ LF+ G ++S +V D S GY YV+F + A RA+ +N LN + + V R +R ++ N+F+KN+ ID + L + F +G S KV D +G+SKG+GFV+++ E+AQKA+ L+G ++ K +YVG Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 HSP 3 Score: 84.7297 bits (208), Expect = 3.609e-16 Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH-----------RDPSLRKSGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573 T+++V ++ ++ D +L +LF + G SV+V RD S + S G+G+V + + A +A+ L+ ++GK + V + R LR I+IKNLD+ I+ + L + FS+FG+I KV ++ GQ KG+G V F + E A KA++++NG ++ K ++V Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 3.132e-44 Identity = 86/166 (51.81%), Postives = 119/166 (71.69%), Query Frame = 1 Query: 88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 585 T SLYVGDL +VT+ LYD F + + SVR+C+D S+ RSL YGY NF + Q+A A+E N + LNGK IRVM+S R P R++G GN+F+KNL +++ + L D F FGNI+SCKVAT +G+S+GYGFVQF+ E++A AI+ LN ++ DK++YVG F+ Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM 188 HSP 2 Score: 102.449 bits (254), Expect = 1.672e-21 Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 1 Query: 70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 576 +A + G +++V +L +VT++ L D+F + G +VS +V L +S GYG+V F A A++ LN T + K I V D + N+++KNLD + L + F+ FG I+S +A D N +GY FV FDN E A++A E +NG K +YVG Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVG 274 HSP 3 Score: 97.4413 bits (241), Expect = 5.380e-20 Identity = 58/177 (32.77%), Postives = 96/177 (54.24%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLRK------------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573 T+LY+ +L+A+V++ L + F + G++VS+ + +D R GY +VNF N ++A RA E +N T K + V + R+ LR+ + NI++KN++ A+ + L FS G I S K+ D G+SKG+GFV F E A A++ +G + + K +YV Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 2.409e-28 Identity = 65/163 (39.88%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 579 ++Y+G+L+ VTDS L++L Q G VV++ + RD G+G+ F + Q+ A ++LN L GKPIRV + +D + N+F+ NLD +D + L+DTFSA G ++ +VA D NG+SKGYGFV +D+ E+A AIE +N L +K + V + Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSY 174
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27 Identity = 65/166 (39.16%), Postives = 100/166 (60.24%), Query Frame = 1 Query: 97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF 582 L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E LN+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK+ K GFV F++E++A+ I+ N K++ G HF Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHF 253
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 5.554e-25 Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 579 ++YVG L+ V++S L++L Q G VVSV + +D T G+G+V F ++A A+++LN L GKPI+V + GA NIF+ NLD +D K L+DTFSAFG IL K+ D+ +G SKG+ F+ F + E++ A+E +NG L ++ + V + Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 176
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25 Identity = 64/163 (39.26%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE---KLNGMLLNDKQVYV 573 ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V F N ++A RA+ L+ + IRVM P GNIF+KNL + K L D FS FG I+SCKVAT +G+SKGYGFVQF +++A+K I+ L+G+LL ++ V Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAIREYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVV 171
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 9.474e-25 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 579 ++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A++++N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+ D + G SKGY F+ F + +++ AIE +NG L ++ + V + Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 9.474e-25 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 579 ++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A++++N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+ D + G SKGY F+ F + +++ AIE +NG L ++ + V + Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 9.474e-25 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 1 Query: 94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 579 ++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A++++N L GKPIRV + GA NIFI NLD ID K L+DTFSAFG IL K+ D + G SKGY F+ F + +++ AIE +NG L ++ + V + Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176 The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bpback to top |