CF832550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.787e-23 Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 1 Query: 97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL-SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573 L + DL+ VT+S L +LF Q VV V + +D T++ G YV F ++ +A AL+++ F L K I++ ++D + N+FI NLD +D + LHDTFS FG I+ + KV D NG SKG+ F+ FD+ E++ AIE +N L +K + V Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKD---KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISV 171
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 1.513e-22 Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = 1 Query: 52 PLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 PL G A T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+ LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 2.580e-22 Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 1 Query: 85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++ +V D G S+G F++FD A++AI NG Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22 Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 1 Query: 76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 + G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ NA++A RA+ LN L K I+V ++ PS N++I L + + K + D F FG+I++ +V D G S+G F++FD A++AI NG Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22 Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 52 PLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 PL G A T+L V L N+T + LF +G + S ++ RD T +SLGYG+VN+S+ +A +A+ LN L K I+V Y+ PS N+++ L K + K + FS +G I++ ++ D G S+G GF++FD A++AI+ LNG Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22 Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = 1 Query: 49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 +P+ GA A T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 26 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22 Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = 1 Query: 49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 +P+ GA A T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 38 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22 Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = 1 Query: 49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 +P+ GA + T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 33 SPMQTGATTDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22 Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22 Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 1 Query: 76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 + G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ NA++A RA+ LN L K I+V + PS N++I L + + K + D F FG I++ +V D G S+G F++FD A++AI NG Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169 The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bpback to top |