CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.787e-23
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL-SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            L + DL+  VT+S L +LF Q   VV V + +D  T++  G  YV F ++ +A  AL+++ F  L  K I++   ++D   +     N+FI NLD  +D + LHDTFS FG I+ + KV  D NG SKG+ F+ FD+ E++  AIE +N   L +K + V
Sbjct:   15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKD---KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISV 171          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.513e-22
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   52 PLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            PL G   A     T+L V  L  N+T  +   LF  +G + S ++ RD  T +SLGYG+VN+S+  +A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K +   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.580e-22
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            G T+L V  L  N+T  +L  LF+ +G+V S ++ RD     SLGYG+VN+  A++A RA+  LN   L  K I+V Y+   PS       N++I  L + +  K + D FS FG I++ +V  D   G S+G  F++FD    A++AI   NG
Sbjct:   18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 1
Query:   76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +  G T+L V  L  N+T  +L  LF+ +G+V S ++ RD     SLGYG+VN+ NA++A RA+  LN   L  K I+V ++   PS       N++I  L + +  K + D F  FG+I++ +V  D   G S+G  F++FD    A++AI   NG
Sbjct:   15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   52 PLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            PL G   A     T+L V  L  N+T  +   LF  +G + S ++ RD  T +SLGYG+VN+S+  +A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K +   FS +G I++ ++  D   G S+G GF++FD    A++AI+ LNG
Sbjct:   26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +P+  GA A     T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   26 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +P+  GA A     T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   38 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +P+  GA  +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   33 SPMQTGATTDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +  G T+L V  L  N+T  +L  LF+ +G+V S ++ RD     SLGYG+VN+ NA++A RA+  LN   L  K I+V  +   PS       N++I  L + +  K + D F  FG I++ +V  D   G S+G  F++FD    A++AI   NG
Sbjct:   15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
SF3B4_DICDI1.787e-2338.75Splicing factor 3B subunit 4 OS=Dictyostelium disc... [more]
ELAV3_HUMAN1.513e-2235.15ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV1_HUMAN2.580e-2237.66ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ELV1B_XENLA3.370e-2236.31ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV3_MOUSE3.370e-2235.15ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV4_RAT9.804e-2234.94ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE9.804e-2234.94ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN9.804e-2234.34ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ELAV2_XENTR9.804e-2236.18ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV1_XENTR9.804e-2236.31ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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