CF832550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: MIP6_YEAST (RNA-binding protein MIP6 OS=Saccharomyces cerevisiae GN=MIP6 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21 Identity = 57/169 (33.73%), Postives = 94/169 (55.62%), Query Frame = 1 Query: 88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF 582 T SL++G+L++ VT+ L +F + S +VCRD T++SLGYGY+NF + +A A + N+T G+ +++M S ++ RK+ N+F NL + + ++ + +GN+LSC L + K GFV FDN+ SA+ I+K N ++ G HF Sbjct: 110 TNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSC-----LLERRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHF 273
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21 Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21 Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21 Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21 Identity = 53/152 (34.87%), Postives = 89/152 (58.55%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + +A +A+ LN L K I+V Y+ PS N+++ +L K ++ K + FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 183
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21 Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A RA+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++ +V D G S+G F++FD A++AI G Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21 Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-----------LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 + G T+L V L N+T +L LF+ +G+V S ++ RD LS SLGYG+VN+ NA++A RA+ LN L K I+V ++ PS N++I L + + K + D F FG+I++ +V D G S+G F++FD A++AI NG Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21 Identity = 56/161 (34.78%), Postives = 92/161 (57.14%), Query Frame = 1 Query: 67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 +N + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 8.300e-21 Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 1 Query: 91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 T+L L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20 Identity = 55/165 (33.33%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 55 LGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD--LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 L G A T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + +A +A+ LN L K I+V Y+ PS N+++ +L K ++ K + FS +G I++ ++ D S+G GF++FD A++AI+ LNG Sbjct: 23 LNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNG 185 The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bpback to top |