CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: MIP6_YEAST (RNA-binding protein MIP6 OS=Saccharomyces cerevisiae GN=MIP6 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21
Identity = 57/169 (33.73%), Postives = 94/169 (55.62%), Query Frame = 1
Query:   88 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF 582
            T SL++G+L++ VT+  L  +F +     S +VCRD  T++SLGYGY+NF +  +A  A +  N+T   G+ +++M S ++   RK+   N+F  NL   +  +  ++ +     +GN+LSC     L  + K  GFV FDN+ SA+  I+K N       ++  G HF
Sbjct:  110 TNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSC-----LLERRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHF 273          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.280e-21
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 53/152 (34.87%), Postives = 89/152 (58.55%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VN+ +  +A +A+  LN   L  K I+V Y+   PS       N+++ +L K ++ K +   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 183          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 1
Query:   85 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            G T+L V  L  N+T  +L  LF+ +G+V S ++ RD     SLGYG+VN+  A++A RA+  LN   L  K I+V Y+   PS       N++I  L + +  K + D FS FG I++ +V  D   G S+G  F++FD    A++AI    G
Sbjct:   18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 1
Query:   76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-----------LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +  G T+L V  L  N+T  +L  LF+ +G+V S ++ RD           LS   SLGYG+VN+ NA++A RA+  LN   L  K I+V ++   PS       N++I  L + +  K + D F  FG+I++ +V  D   G S+G  F++FD    A++AI   NG
Sbjct:   15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 56/161 (34.78%), Postives = 92/161 (57.14%), Query Frame = 1
Query:   67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +N  +   T+L V  L  N+T  +L  LF  +G++ S ++ RD  T  +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.300e-21
Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            T+L    L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 55/165 (33.33%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   55 LGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD--LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            L G   A     T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VN+ +  +A +A+  LN   L  K I+V Y+   PS       N+++ +L K ++ K +   FS +G I++ ++  D      S+G GF++FD    A++AI+ LNG
Sbjct:   23 LNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNG 185          
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
MIP6_YEAST1.280e-2133.73RNA-binding protein MIP6 OS=Saccharomyces cerevisi... [more]
ELAV2_PONAB1.280e-2136.18ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE1.280e-2136.18ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN1.280e-2136.18ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV3_XENLA2.853e-2134.87ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV1_MOUSE2.853e-2137.01ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
ELV1A_XENLA4.866e-2135.12ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
ELAV2_XENLA6.355e-2134.78ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV2_RAT8.300e-2135.53ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV3_XENTR1.084e-2033.33ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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