CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   58 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 549
            GGG +      T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V+F++  +A  A++ +N   +  K ++V Y+   P        N+++ NL + I    L   F  +GNI+   +  D L G+ +G  FV+F+  E AQ+AI  LN ++
Sbjct:   91 GGGGDTQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVI 253          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 1
Query:   43 GRTPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 549
            GR   GGG+N      T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V+F+   ++ RA++ LN   +  K ++V Y+   P        N+++ NL + I    L   F  +G I+   +  D L G+ +G  FV+F+  E AQ+AI  LN ++
Sbjct:   99 GRDGHGGGSNG-----TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVI 261          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 61/185 (32.97%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP------------SLRKSGAG-------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            L+VG+L  NV  +QL  LF   G V  V V  D  T RS G+G+V  S+  E   A +  N   L+G+P+RV      P            S   SG+G              +++ NL   +D  AL   FS  G ++  +V  D  +G+SKG+GFV +D+ +  Q AI+ L+G  L+ +Q+ V
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.260e-18
Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   58 GGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 549
            GG    NQ    T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V+F++  +A  A++ LN   +  K ++V Y+   P        N+++ NL + I    L   F  +GNI+   +  D L G+ +G  FV+F+  E AQ+AI  LN ++
Sbjct:   73 GGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVI 236          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.260e-18
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   64 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-------------RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNG 543
            G+N +    T+L V  L   +T+ ++  LF+ +G++ SV++ RD S               +SLGYG+VN+   Q+A +A+ +LN   L  K I+V ++   PS       N+++  L K +  + L   F+ FG I++ ++  +     Q+KG GF++FD  E A +AI  LNG
Sbjct:  176 GSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.260e-18
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   64 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-------------RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNG 543
            G+N +    T+L V  L   +T+ ++  LF+ +G++ SV++ RD S               +SLGYG+VN+   Q+A +A+ +LN   L  K I+V ++   PS       N+++  L K +  + L   F+ FG I++ ++  +     Q+KG GF++FD  E A +AI  LNG
Sbjct:  140 GSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.952e-18
Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   70 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 549
            N  +   T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V+F++  ++ RA+++LN   +  K ++V Y+   P        N+++ NL + I    L   F  +G+I+   +  D L G+ +G  FV+++  E AQ+AI  LN ++
Sbjct:  118 NDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 276          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.855e-18
Identity = 49/154 (31.82%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 549
            T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V+F++  ++ RA+++LN   +  K ++V Y+   P        N+++ NL + I    L   F  +G+I+   +  D L G+ +G  FV+++  E AQ+AI  LN ++
Sbjct:  127 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 278          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.122e-17
Identity = 49/154 (31.82%), Postives = 84/154 (54.55%), Query Frame = 1
Query:   91 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGML 549
            T+L V  L  ++ D +LY LF  +G + + R+ RD  T  S GYG+V+F +  +A RA+  LN   +  K I+V ++   P   +    N+++ NL ++I  + L   F  +G I+   +  D + G  +G  F++F+  E AQ+AI  LN ++
Sbjct:   78 TNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFAR--PGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVI 229          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.465e-17
Identity = 53/170 (31.18%), Postives = 90/170 (52.94%), Query Frame = 1
Query:   94 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS-----LRKSG------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT-DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 567
            +++VG L  ++ D  L   F  +G V+  RV  +  T RS GYGYV+F N   A +A++ +    ++G+PI    S   P+      +K G      +  +F+ NL    D  A+ + F+  G ++S ++ T     Q KG+G+VQF N E A+KA++ L G  ++++ V
Sbjct:  169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338          
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
SXL_MUSDO3.487e-1931.52Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
SXL_CERCA4.554e-1932.94Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
ROC1_ARATH4.554e-1932.97Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
SXL_CHRRU2.260e-1832.53Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
ELAV_DROVI2.260e-1831.43Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV_DROME2.260e-1831.43Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
SXL_DROME2.952e-1831.06Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
SXL_DROSU3.855e-1831.82Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
SXL_MEGSC1.122e-1731.82Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
NSR1_YEAST1.465e-1731.18Nuclear localization sequence-binding protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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