CF832550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17 Identity = 58/195 (29.74%), Postives = 94/195 (48.21%), Query Frame = 1 Query: 49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 +P+ GA A T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 38 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17 Identity = 58/195 (29.74%), Postives = 94/195 (48.21%), Query Frame = 1 Query: 49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543 +P+ GA A T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 38 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17 Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = 1 Query: 58 GGGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 543 GGG+ N Q T+LY+ L+ TD L L G++VS + D +T + GYG+V+F + A +A+ L + + + + +DP+ N++I NL ++D + L FG ++S ++ D +G S+G GF + ++ E + I NG Sbjct: 46 GGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNG 199
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16 Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 1 Query: 97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------GAGN------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573 ++VG+L + + L +LF + G V V V D T RS G+G+V S+ +E A + N L+G+ +RV S P R++ G G+ +++ NL +D AL FS G ++ KV D +G+S+G+GFV + + E AIE L+G+ LN + + V Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV-NSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16 Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552 T ++ Q T+LY+ L TD L L G++VS + D +T + GYG+V+F + A +A+ L + + + +DP+ N++I NL ++D + L + FG+++S ++ D NG S+G GF + ++ E + I+ NG L Sbjct: 42 TNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 200
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16 Identity = 45/162 (27.78%), Postives = 81/162 (50.00%), Query Frame = 1 Query: 67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552 ++ Q T+LY+ L TD L L G++VS + D +T + GYG+V+F + A +A+ L + + + +DP+ N++I NL ++D + L + FG+++S ++ D NG S+G GF + ++ E + I+ NG L Sbjct: 52 SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16 Identity = 45/162 (27.78%), Postives = 81/162 (50.00%), Query Frame = 1 Query: 67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552 ++ Q T+LY+ L TD L L G++VS + D +T + GYG+V+F + A +A+ L + + + +DP+ N++I NL ++D + L + FG+++S ++ D NG S+G GF + ++ E + I+ NG L Sbjct: 53 SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16 Identity = 46/161 (28.57%), Postives = 81/161 (50.31%), Query Frame = 1 Query: 64 GANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 543 G+N N Q T+LY+ L+ TD L L G++VS + D +T + GYG+V+F + A +A+ L + + + + +DP+ N++I NL ++D + L FG ++S ++ D +G S+G GF + ++ E + I NG Sbjct: 46 GSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNG 197
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16 Identity = 45/159 (28.30%), Postives = 80/159 (50.31%), Query Frame = 1 Query: 76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552 +Q T+LY+ L N TD L L G++VS + D +T + GYG+V+F + A +A+ L + + + + +DP+ N++I NL ++D + L + FG ++S +V D +G S+G GF + ++ E + I NG + Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16 Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 1 Query: 97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------MYSHRDPSLRKSG---------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573 ++VG+L + + L +LF + G V V V D T RS G+G+V S+ +E A + N L+G+ +RV S R+ S + G + +++ NL +D AL FS G ++ KV D +G+S+G+GFV + + E AIE L+G+ LN + + V Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267 The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bpback to top |