CF832550

Overview
NameCF832550
Unique NameCF832550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 58/195 (29.74%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +P+  GA A     T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   38 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 58/195 (29.74%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            +P+  GA A     T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   38 SPMQTGA-ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = 1
Query:   58 GGGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            GGG+  N Q   T+LY+  L+   TD  L  L    G++VS +   D +T +  GYG+V+F +   A +A+  L  + +  +  +     +DP+       N++I NL  ++D + L      FG ++S ++  D +G S+G GF + ++ E  +  I   NG
Sbjct:   46 GGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNG 199          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------GAGN------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            ++VG+L  +   + L +LF + G V  V V  D  T RS G+G+V  S+ +E   A +  N   L+G+ +RV  S   P  R++        G G+      +++ NL   +D  AL   FS  G ++  KV  D  +G+S+G+GFV + + E    AIE L+G+ LN + + V
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV-NSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   49 TPLGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552
            T     ++  Q   T+LY+  L    TD  L  L    G++VS +   D +T +  GYG+V+F +   A +A+  L    +  +  +     +DP+       N++I NL  ++D + L +    FG+++S ++  D NG S+G GF + ++ E  +  I+  NG  L
Sbjct:   42 TNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 200          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 45/162 (27.78%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552
            ++  Q   T+LY+  L    TD  L  L    G++VS +   D +T +  GYG+V+F +   A +A+  L    +  +  +     +DP+       N++I NL  ++D + L +    FG+++S ++  D NG S+G GF + ++ E  +  I+  NG  L
Sbjct:   52 SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 45/162 (27.78%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   67 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552
            ++  Q   T+LY+  L    TD  L  L    G++VS +   D +T +  GYG+V+F +   A +A+  L    +  +  +     +DP+       N++I NL  ++D + L +    FG+++S ++  D NG S+G GF + ++ E  +  I+  NG  L
Sbjct:   53 SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 46/161 (28.57%), Postives = 81/161 (50.31%), Query Frame = 1
Query:   64 GANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 543
            G+N N Q   T+LY+  L+   TD  L  L    G++VS +   D +T +  GYG+V+F +   A +A+  L  + +  +  +     +DP+       N++I NL  ++D + L      FG ++S ++  D +G S+G GF + ++ E  +  I   NG
Sbjct:   46 GSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNG 197          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 45/159 (28.30%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   76 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 552
            +Q   T+LY+  L  N TD  L  L    G++VS +   D +T +  GYG+V+F +   A +A+  L  + +  +  +     +DP+       N++I NL  ++D + L +    FG ++S +V  D +G S+G GF + ++ E  +  I   NG  +
Sbjct:   57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of CF832550 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 1
Query:   97 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------MYSHRDPSLRKSG---------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 573
            ++VG+L  +   + L +LF + G V  V V  D  T RS G+G+V  S+ +E   A +  N   L+G+ +RV            S R+ S  + G         +  +++ NL   +D  AL   FS  G ++  KV  D  +G+S+G+GFV + + E    AIE L+G+ LN + + V
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
The following BLAST results are available for this feature:
BLAST of CF832550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ELAV4_XENTR4.263e-1729.74ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA4.263e-1729.74ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
RBMS2_MOUSE7.271e-1728.83RNA-binding motif, single-stranded-interacting pro... [more]
ROC1_NICSY1.620e-1632.1829 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
RBMS3_MOUSE3.609e-1627.38RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_PONAB4.713e-1627.78RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_HUMAN4.713e-1627.78RNA-binding motif, single-stranded-interacting pro... [more]
RBMS2_HUMAN4.713e-1628.57RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_RAT4.713e-1628.30RNA-binding motif, single-stranded-interacting pro... [more]
ROC1_NICPL6.155e-1630.7330 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832550 ID=CF832550; Name=CF832550; organism=Citrus sinensis; type=EST; length=585bp
TTTTTCTTTCCCCTTTAGAGATGGGGCAGGTTCAAGCTCAGGGGCAGAAC
GCCCCTTGGAGGTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTT
ACGTCGGGGATCTGGAGGCGAACGTGACCGATTCGCAGCTGTACGATCTG
TTTAATCAAATGGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTC
GACCCGACGATCTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGG
AAGCTGCAAGGGCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAG
CCCATTAGGGTTATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGG
CGCAGGGAATATTTTCATTAAGAACCTAGATAAGGCCATTGATCACAAAG
CTTTGCACGATACCTTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTT
GCTACAGACCTCAATGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGA
CAATGAGGAGTCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTAT
TGAATGACAAGCAAGTTTATGTTGGACATTTCCTC
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