CF832555

Overview
NameCF832555
Unique NameCF832555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:278..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.839e-43
Identity = 84/162 (51.85%), Postives = 106/162 (65.43%), Query Frame = -2
Query:  308 IAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 793
            +A EG+ TG  VY G    +  GN+  +++IPEG  VCN+E   GD G   RASG +  ++S   D     V++PSG +K     CRAMIG VAGGGRT+KP +KAG  YHK + K   WP+VRGVAMN V+HP GGG HQH+G   TV R+APPG+KVG I
Sbjct:   69 LAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSREADK--VLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 86/164 (52.44%), Postives = 108/164 (65.85%), Query Frame = -2
Query:  314 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 805
            + L +A EG+  G+ +  G  A +  GN LP+R IPEG  VCNVE  VGD G  ARASG  A +++H  D D   ++LPSG  K +   C+A IG VAGGGRTEKP +KAG  +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:   66 RRLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/164 (53.05%), Postives = 108/164 (65.85%), Query Frame = -2
Query:  314 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 805
            + L +A+EG+  G  +  G  AT+  GN LP+  IPEG  VCNVE H GD G  ARA G  A +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:   66 QRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/164 (53.05%), Postives = 108/164 (65.85%), Query Frame = -2
Query:  314 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 805
            + L +A+EG+  G  +  G  AT+  GN LP+  IPEG  VCNVE H GD G  ARA G  A +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:   66 QRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.079e-42
Identity = 90/164 (54.88%), Postives = 108/164 (65.85%), Query Frame = -2
Query:  308 LFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 799
            L  AAEGMY GQ +  G  A    GN+LP+  IPEG  V NVE   GD G LAR +G YA+++        T ++LPSG  K +P+  RA IG  AG GR EKP++KAG AYHK++VK   WP+VRGVAMN V+HP GGG HQH G  STV R APPG+KVG I
Sbjct:   67 LMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGRA--GAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHI 228          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.840e-42
Identity = 89/161 (55.28%), Postives = 109/161 (67.70%), Query Frame = -2
Query:  308 AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 790
            AAEGMY GQ +  G  A  + GN+LPV  IPEG  V N+E   GD G L RA G YA+I+  +   + T ++LPSG  K +P+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+VRGVAMN V HPHGGG+HQ     +TV R+APPG+KVG I
Sbjct:   70 AAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHI 228          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.840e-42
Identity = 87/164 (53.05%), Postives = 107/164 (65.24%), Query Frame = -2
Query:  314 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 805
            + L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE + GD G  ARASG  A +++H  D D   V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN YHK + +   +P+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:   66 RRLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTH--DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.403e-42
Identity = 87/167 (52.10%), Postives = 107/167 (64.07%), Query Frame = -2
Query:  308 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 808
            ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:   68 EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.139e-42
Identity = 87/167 (52.10%), Postives = 107/167 (64.07%), Query Frame = -2
Query:  308 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 808
            ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T V+LPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQHIG  S+V R   PG+KVG I
Sbjct:   68 EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.099e-42
Identity = 84/167 (50.30%), Postives = 108/167 (64.67%), Query Frame = -2
Query:  308 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 808
            ++ L +A EG+  G  + CG  A +  GN LP+  IPEG  +CN+E   GD G  AR+SG YA+I++H  +   T V++PSG  K +   CRA IG VAGGGRTEKP ++AGN ++K   K   WP VRGVAMN V+HP GGG  QH G   TV R+ PPG+KVG I
Sbjct:   65 EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229          
The following BLAST results are available for this feature:
BLAST of CF832555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ARCFU2.839e-4351.8550S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_HALWD6.324e-4352.4450S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_HALSA6.324e-4353.0550S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS36.324e-4353.0550S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_AERPE1.079e-4254.8850S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_HYPBU1.840e-4255.2850S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_HALLT1.840e-4253.0550S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_METM52.403e-4252.1050S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP3.139e-4252.1050S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_UNCMA4.099e-4250.3050S ribosomal protein L2P OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832555 ID=CF832555; Name=CF832555; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTACTTAATTCGATGAAGGCATCCATTAATATCTC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGG
GGTTATGACTGATGATAACGGCATAATCACCAGAAGCTCTAGCGAGAACA
CCGCGATCACCAACATGATGCTCAACGTTGCAAACGACAGCTCCTTCAGG
GATAGATCTAACGGGCAACACATTACCAACCATCAGAGTGGCTTTCTTGC
CGCAGTACACGAACTGACCCGTGTACATACCCTCGGCGGCAATGAAAAGC
TCCTTTTGTTTCATG
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