CF832555

Overview
NameCF832555
Unique NameCF832555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:278..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_MYCHJ (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 60/164 (36.59%), Postives = 83/164 (50.61%), Query Frame = -2
Query:  320 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 808
            +K   +A + +  GQ +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + +     +KL SG  + I + CRA IG V     +   + KAG   HK        P VRG  MNP +HPHGGG   Q IG  S +    P G+K
Sbjct:  101 EKRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDENGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGGEGKQPIGRKSPL---TPWGKK 256          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_LACLS (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 58/152 (38.16%), Postives = 79/152 (51.97%), Query Frame = -2
Query:  353 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 805
            K   +AA+G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPHGGG   Q +G  S
Sbjct:  101 KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_LACLM (50S ribosomal protein L2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 58/152 (38.16%), Postives = 79/152 (51.97%), Query Frame = -2
Query:  353 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 805
            K   +AA+G+  G  V  G  A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPHGGG   Q +G  S
Sbjct:  101 KSYILAAKGLEVGMTVVSGPDADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_DESVM (50S ribosomal protein L2 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 55/153 (35.95%), Postives = 79/153 (51.63%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 808
            +K   +A  G+  G  V  G+ A +  GN +P+  IP G V+ N+E + G  G   RA+G YA +++   +     +++PSG  + + + C A IGQV         L KAG         RN W    PKVRGVAMNP++HP GGG  +  G
Sbjct:  100 EKRYILAPLGIKQGDMVQAGEGADIKPGNAMPMARIPVGTVLHNIELYPGRGGQFCRAAGTYAQLVA--KEGKYALLRMPSGEVRKVLAACCATIGQVGNVNHENISLGKAG---------RNRWLGRRPKVRGVAMNPIDHPLGGGEGRSSG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_DESRM (50S ribosomal protein L2 OS=Desulfotomaculum reducens (strain MI-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = -2
Query:  380 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 808
            +K   +A  G+  G  V  G  A + VGN LP+R+IP G +V N+E + G    + R++G  A +++   +     ++LPSG  +++   CRA IGQV         + KAG + H         P VRG  MNPV+HPHGGG
Sbjct:  100 EKRYILAPVGLEVGVIVESGPDADIKVGNCLPLRNIPVGTMVHNIELYPGAGAQMVRSAGAAAQLMA--KEGKYANLRLPSGEMRLVLQECRATIGQVGNLEHENVTIGKAGRSRH-----LGIRPTVRGKVMNPVDHPHGGG 235          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_CHLTE (50S ribosomal protein L2 OS=Chlorobium tepidum GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 54/166 (32.53%), Postives = 86/166 (51.81%), Query Frame = -2
Query:  323 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 808
            +K   +A + +  G  +  G+K  + VGN +P+++IP G+ V N+E  +G  G +AR++G YAV+ +   + +   +K+PSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GGG  +           +P GQ
Sbjct:  100 EKRYILAPKNLKVGDRIESGEKVDIKVGNTMPLKNIPIGSDVHNIELKIGKGGQIARSAGAYAVLAAR--EGNYATLKMPSGEIRKVRIECRATIGVIGNAEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = -2
Query:  362 IAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 793
            +A + +  G  +  G    +  GNV+P+ ++P G +V N+E  +G  G LAR++G YA ++    D+D   V+L SG ++++   CR  IG V+        + KAG      R   N     RGVAMNP++HPHGGG  +  G
Sbjct:  105 LAPQRLAVGDTIVAGNYVDVKPGNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQLVGR--DHDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHN-----RGVAMNPIDHPHGGGEGRTSG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = -2
Query:  362 IAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 793
            +A + +  G  V  G    +  GNV+P+ ++P G ++ N+E  +G  G LAR++G YA ++    D D   ++L SG ++++   CR  IG V+        + KAG         RN W    P  RGV+MNP++HPHGGG  +  G
Sbjct:  105 LAPQRLAVGDSVVAGNYVDVKPGNVMPLGNMPVGTIIHNIEVKIGKGGQLARSAGTYAQLVGR--DQDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAG---------RNRWLGRKPHNRGVSMNPIDHPHGGGEGRTSG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_BACSK (50S ribosomal protein L2 OS=Bacillus clausii (strain KSM-K16) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = -2
Query:  380 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 808
            +K   +A +G+  G  +  G  A +  GN LP+ +IP G V+ N+E   G  G L R++G  A ++    + D   V+L SG  + I S CRA IGQV   G  E  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  100 EKRYILAPKGLTVGTVIVSGPDADIKTGNALPLANIPVGTVIHNIELRPGKGGQLVRSAGTEAQLL--GKEGDYALVRLNSGETRYILSTCRATIGQV---GNVEHELINIGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RK2_PROWI (50S ribosomal protein L2, plastid OS=Prototheca wickerhamii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = -2
Query:  347 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQ-HIGHASTV 808
            +K   ++  G+  G+ V     A + VGN LP+ +IP G  V NVE   G  G L R++G  A I++   +     + LPSG  ++IP  C A +G+V     +   L KAG +  ++  +R   P VRG AMNPV+HPHGGG  +  IG A  V
Sbjct:  100 EKRYILSPTGLKVGEMVIASPNAPITVGNTLPLYNIPLGTSVHNVELQPGAGGQLVRSAGSVAQIVA--KEGQWATLHLPSGEYRLIPQKCWATVGRVGNLDNSNITLGKAGRS--RWLSQR---PHVRGSAMNPVDHPHGGGEGKAPIGRARPV 247          
The following BLAST results are available for this feature:
BLAST of CF832555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MYCHJ1.201e-1736.5950S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_LACLS1.201e-1738.1650S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_LACLM1.201e-1738.1650S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_DESVM1.201e-1735.9550S ribosomal protein L2 OS=Desulfovibrio vulgaris... [more]
RL2_DESRM1.201e-1736.3650S ribosomal protein L2 OS=Desulfotomaculum reduc... [more]
RL2_CHLTE1.201e-1732.5350S ribosomal protein L2 OS=Chlorobium tepidum GN=... [more]
RL2_BRASO1.201e-1734.7250S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_BRAJA1.201e-1733.7850S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_BACSK1.201e-1738.1050S ribosomal protein L2 OS=Bacillus clausii (stra... [more]
RK2_PROWI1.201e-1737.4250S ribosomal protein L2, plastid OS=Prototheca wi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832555 ID=CF832555; Name=CF832555; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTACTTAATTCGATGAAGGCATCCATTAATATCTC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGG
GGTTATGACTGATGATAACGGCATAATCACCAGAAGCTCTAGCGAGAACA
CCGCGATCACCAACATGATGCTCAACGTTGCAAACGACAGCTCCTTCAGG
GATAGATCTAACGGGCAACACATTACCAACCATCAGAGTGGCTTTCTTGC
CGCAGTACACGAACTGACCCGTGTACATACCCTCGGCGGCAATGAAAAGC
TCCTTTTGTTTCATG
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