CF832555

Overview
NameCF832555
Unique NameCF832555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:278..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.473e-31
Identity = 71/166 (42.77%), Postives = 98/166 (59.04%), Query Frame = -2
Query:  308 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 805
            + L  A  G+  G  VY GK+A   +G++ P+  IPEG  +  +E++ GD G L RASGD+A+++      D   V+LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG  H +     TV + APPG+KVG I
Sbjct:   66 QSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL8_ENTHI (60S ribosomal protein L8 (Fragment) OS=Entamoeba histolytica GN=RPL8 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.047e-29
Identity = 57/83 (68.67%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  557 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAK 805
            KELFI AEG+Y+GQ++YCG KA+L +GNVLP+   PEG VVCNVE   GDRG++ARASG+YA +ISHN DN+TTR++LPSGAK
Sbjct:   64 KELFICAEGLYSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNETTRIRLPSGAK 146          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = -2
Query:  362 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 805
            K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:  103 KRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = -2
Query:  362 KELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 805
            K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HPHGGG  +  G
Sbjct:  103 KRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.038e-22
Identity = 60/149 (40.27%), Postives = 82/149 (55.03%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  V  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IPS CRA IG+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDKVQSGVDAAIKTGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.038e-22
Identity = 64/164 (39.02%), Postives = 89/164 (54.27%), Query Frame = -2
Query:  320 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 808
            +K   +A EG+  GQ V  G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I + CRA IG V  G  +   L KAG + H         P VRG  MNP++HPHGGG + Q IG  + +    P G+K
Sbjct:  101 EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHPHGGGVSKQPIGRKAPL---TPWGKK 256          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.050e-21
Identity = 59/149 (39.60%), Postives = 83/149 (55.70%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +AA+G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IP+ CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SERP5 (50S ribosomal protein L2 OS=Serratia proteamaculans (strain 568) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.989e-21
Identity = 57/149 (38.26%), Postives = 82/149 (55.03%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  I++   D     ++L SG  + +P  CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKVGNALPMRNIPVGSTVHNVEMKPGKGGQIARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVPVDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHPHGGGEGKNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.804e-21
Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  359 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 808
            +K   IA  G+  G  V  G+   + VGN LP+R+IP G +V N+E   G  G L RA+G  A +++   + D   +++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  100 EKRYIIAPHGLKVGDIVESGENVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMA--KEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.887e-21
Identity = 60/155 (38.71%), Postives = 86/155 (55.48%), Query Frame = -2
Query:  359 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 808
            +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  100 EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
The following BLAST results are available for this feature:
BLAST of CF832555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NANEQ9.473e-3142.7750S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RL8_ENTHI1.047e-2968.6760S ribosomal protein L8 (Fragment) OS=Entamoeba h... [more]
RL2_BORRA3.608e-2240.5450S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL3.608e-2240.5450S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_PROMH8.038e-2240.2750S ribosomal protein L2 OS=Proteus mirabilis (str... [more]
RL2_MYCAP8.038e-2239.0250S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_EDWI91.050e-2139.6050S ribosomal protein L2 OS=Edwardsiella ictaluri ... [more]
RL2_SERP53.989e-2138.2650S ribosomal protein L2 OS=Serratia proteamaculan... [more]
RL2_THETN6.804e-2139.3550S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_THEPX8.887e-2138.7150S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832555 ID=CF832555; Name=CF832555; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTACTTAATTCGATGAAGGCATCCATTAATATCTC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGG
GGTTATGACTGATGATAACGGCATAATCACCAGAAGCTCTAGCGAGAACA
CCGCGATCACCAACATGATGCTCAACGTTGCAAACGACAGCTCCTTCAGG
GATAGATCTAACGGGCAACACATTACCAACCATCAGAGTGGCTTTCTTGC
CGCAGTACACGAACTGACCCGTGTACATACCCTCGGCGGCAATGAAAAGC
TCCTTTTGTTTCATG
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