CF832558

Overview
NameCF832558
Unique NameCF832558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5859 contig Csv1_Contig5859:194..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS4L_MOUSE (tRNA-dihydrouridine synthase 4-like OS=Mus musculus GN=Dus4l PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   10 AFTIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 282
            A TI   +  E  G S + VHGRT +E+        ++AIK +K  + IP++ANG++R +++ +   + TG +GV+ A  LL NPA+FAG+
Sbjct:  166 ARTIDLCRKAEATGVSWITVHGRTVEERHQP---VHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS4_YEAST (tRNA-dihydrouridine synthase 4 OS=Saccharomyces cerevisiae GN=DUS4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 297
            T++  + L DAG   + +HGRTR  +  +   A+ +AIK +   +    +PV+ANG+   + D+++  + TG  GV++   LL NPALFAG+ T  W
Sbjct:  179 TVELCRKLCDAGVDWITIHGRTRRTRSSQP--ANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYTTCPW 273          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS4L_HUMAN (tRNA-dihydrouridine synthase 4-like OS=Homo sapiens GN=DUS4L PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 282
            T+   +  E  G S + VHGRT +E+        +++IK +K  + IPV+ANG++R +++ +     TG +GV+ A  LL NPA+FAG+
Sbjct:  168 TVDLCQKAEATGVSWITVHGRTAEERHQP---VHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253          
The following BLAST results are available for this feature:
BLAST of CF832558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DUS4L_MOUSE2.038e-1138.46tRNA-dihydrouridine synthase 4-like OS=Mus musculu... [more]
DUS4_YEAST4.539e-1136.08tRNA-dihydrouridine synthase 4 OS=Saccharomyces ce... [more]
DUS4L_HUMAN5.928e-1137.08tRNA-dihydrouridine synthase 4-like OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832558 ID=CF832558; Name=CF832558; organism=Citrus sinensis; type=EST; length=669bp
TCCTAATTTGCCTTTACAATCAAATATGCAAAGATGCTAGAGGATGCTGG
GCGCTCTCTTTTAGCTGTCCATGGCCGAACAAGGGATGAGAAAGATGGGA
AGAAATTCCGAGCTGACTGGAATGCCATAAAGGCCGTTAAAAATGCTCTC
AGAATACCAGTCCTTGCTAACGGGAATGTAAGGCACATGGAGGATGTTCA
GAAATGTTTGGAGGAGACTGGATGTGAAGGGGTACTTTCGGCTGAGTCTC
TCCTCGAGAATCCAGCGCTGTTTGCTGGATTTCGAACCGCTGAATGGATA
GTGGGAAGTGAAGAAATTAGTAAAGATGGAAATCTCGACCAGGCAGATCT
ACTTGTGGAGTACCTGAAGCTTTGTGAAAAGTATCCCGTGCCCTGGAGAA
TGATCCGCTCTCATGTACACAAATTGTTGGGGGAGTGGTTTAGGATTCAA
CCCGGTGTTCGAGGGGATCTCAATGCACAGAACAGGTTGACATTTGAATT
TCTTTATAATTTGGTGGATCGACTTAGAGAACTAGGTGTGAGAATTCCAC
TTTATAAGAAGGACGCTGATGATGCAGAGATTCTGGCTGATGATTTGGCT
TCTTGAATTCTCTGCTGCTAGGAAGTTAAATGGGTTTCATTTGCCTGCAG
TTTTGTTTTGTGGTGAAGC
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