CF832563

Overview
NameCF832563
Unique NameCF832563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10472 contig Csv1_Contig10472:772..1369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_PYRIL (50S ribosomal protein L30e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.756e-13
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  145 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 423
            I+  L + + +GK  +G+K V +++ +S  KL++L+ N P   K ++EYYA LA V V  + G++++LG A  +  ++  L++IDPG S+I+K
Sbjct:    4 ISRELQVAISTGKVVMGFKEVKKTILTSTPKLVILAANAPKWAKEDVEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVIDPGQSEILK 96          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_METKA (50S ribosomal protein L30e OS=Methanopyrus kandleri GN=rpl30e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 33/97 (34.02%), Postives = 61/97 (62.89%), Query Frame = -1
Query:  139 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 429
            + I  ++ + +++G   LG    ++ L+  K KL++++ NCP   + +IEYYA LA V V  Y G ++DLG  CG+   V+ ++++D G+SD+I ++
Sbjct:    2 QEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDLIATV 98          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_SULSO (50S ribosomal protein L30e OS=Sulfolobus solfataricus GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = -1
Query:  148 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 426
            S    L  ++K+GK   G K  ++ ++ SK K++++++      K +I +YA L+ + V+ Y G+  DLGT CGK F +S +SIID GDS I+
Sbjct:   10 SFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKIL 102          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_METS3 (50S ribosomal protein L30e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 33/95 (34.74%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  139 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 423
            ++  + + + +G  TLG +  ++SL+  KG+L++++ N P     ++EYY  L+ +  + Y G++V+LG+ CGK F V+ L + DPGDS I+  L
Sbjct:    4 VDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDL 98          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_PYRFU (50S ribosomal protein L30e OS=Pyrococcus furiosus GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  148 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 411
            L   M++GK  LG    +R  ++   KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I+
Sbjct:    7 LRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKIL 94          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_THESM (50S ribosomal protein L30e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 32/94 (34.04%), Postives = 58/94 (61.70%), Query Frame = -1
Query:  130 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 411
            L   +++GK  +G    +R  R+ + KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F ++ ++I++PG+S I+    G+
Sbjct:    7 LRKAIETGKVVIGSNETMRLARTGEAKLIIMAKNAPKEVKDDINYYAGLSSIPVYEFEGTSVELGTLLGKPFVIALMAIVEPGESKILSLAGGK 100          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_AERPE (50S ribosomal protein L30e OS=Aeropyrum pernix GN=rpl30e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 32/94 (34.04%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  145 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 426
            S+   L  ++K+G Y +G+K  L+++++ + K I+++ N PP  + ++EYYA LA + +  Y G  +D+G   G+   VS L++ID G S I++
Sbjct:    2 SVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRILE 95          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_PYRHO (50S ribosomal protein L30e OS=Pyrococcus horikoshii GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  148 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 411
            L   +++GK  LG    +R  ++   KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I+
Sbjct:    7 LKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAB (50S ribosomal protein L30e OS=Pyrococcus abyssi GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  148 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 411
            L   +++GK  LG    +R  ++   KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I+
Sbjct:    7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30E_METVS (50S ribosomal protein L30e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = -1
Query:  148 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 423
            IN  + + + +G   LG K  +++++  +GKL++++ NC    K +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I+
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPVYTHQVTSIELGAICGKPFPVSALLVLEPGNSAIL 100          
The following BLAST results are available for this feature:
BLAST of CF832563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30E_PYRIL1.756e-1336.5650S ribosomal protein L30e OS=Pyrobaculum islandic... [more]
RL30E_METKA6.673e-1334.0250S ribosomal protein L30e OS=Methanopyrus kandler... [more]
RL30E_SULSO1.487e-1237.6350S ribosomal protein L30e OS=Sulfolobus solfatari... [more]
RL30E_METS31.487e-1234.7450S ribosomal protein L30e OS=Methanobrevibacter s... [more]
RL30E_PYRFU1.942e-1239.7750S ribosomal protein L30e OS=Pyrococcus furiosus ... [more]
RL30E_THESM4.325e-1234.0450S ribosomal protein L30e OS=Thermococcus sibiric... [more]
RL30E_AERPE4.325e-1234.0450S ribosomal protein L30e OS=Aeropyrum pernix GN=... [more]
RL30E_PYRHO7.378e-1238.6450S ribosomal protein L30e OS=Pyrococcus horikoshi... [more]
RL30E_PYRAB7.378e-1238.6450S ribosomal protein L30e OS=Pyrococcus abyssi GN... [more]
RL30E_METVS9.636e-1232.6150S ribosomal protein L30e OS=Methanococcus vannie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832563 ID=CF832563; Name=CF832563; organism=Citrus sinensis; type=EST; length=597bp
TTTTTTTTTTTTTTTAAGAAAGTGTATCTCGAGGATGTTCAAAAGCAAAT
TTCAATTGAGAAACAGCATTCCACAATTAAACAATCACAACACTAAGATG
CAGGTTTGAACTCTGAATCAGGCTCAGTGCTCTCCCGGAAGTGACTTGAT
GATATCAGAATCACCTGGATCGATAATGCTCAAGCAAGACACACGGAAGT
ACTTTCCACATGCTGTTCCCAAATCGACATTGTTTCCATTGTAGTGGTGT
ACACCAACTTTAGCAAGCATAGCATAGTACTCAATCTCTGATTTTCTCAA
CGGTGGGCAATTATTTGACAAAAGAATCAACTTTCCCTTAGAGCTTCTGA
GAGATCGAAGAACAGTTTTGTAACCAAGAGTGTATTTGCCACTCTTCATC
ACAAGAGCAAGCCTGTTGTTGATGCTCTCATGAGTCTTCTTCGTCTTCTT
GCTTGTAACCATTTTCGACTGTTTGGTTGCCTGGAAAATCAGATGACACA
GAAAATTTAGAGGCAATAGAAAAACATGAAATGGGCTTTAGGGTTTGGTT
TAGAGCTTACACCAAAAAGACTTTGCGGGAGGCGGCAAAGTAACAAA
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