CF832579

Overview
NameCF832579
Unique NameCF832579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = -1
Query:  318 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 701
            K+LKDL K P    SAG V E ++F W  TI+GPPD+ Y GG F   + FP +YP  PP V F + ++HPN+  +G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  R++++
Sbjct:   11 KQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFK 152          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            R+ +E K  ++D P    A P        D+ +W+  I G P + + GG++ +T+ FP +YP +PPK  F   +FHPN+  +G++CL IL E+  W PA+TI ++LL I  LL DPN   P   E   M+K D+ +YE   R+  ++ A
Sbjct:    8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            ++++EL++++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:   18 QVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            ++++EL++++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:   18 QVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            ++++EL++++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:   18 QVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = -1
Query:  288 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRNKYETTARSWTQKY 710
            R++KE K LQ +        P  E D++ W A I GPPD+PY  G F + I  P +YP +PP + F TK+FHPNI+   G ICLD+LK  WS   T+  V  SI +LL+ P  D PL  +  ++ +  D   +++ AR +T+ Y
Sbjct:    4 RLMKEYKVLQNEEFEDILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            ++ +E+  L  DPP         ED+   QA+I GP  +PY GG+F + +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W P L I +VLL++  LL  PNP+  L  E   +     + Y   A+ +T+ +A
Sbjct:   18 QVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            ++++EL++++  PP          D+   QA I GP  +PYA GVF V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:   18 QVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            ++++EL++++  PP          D+   QA I GP  +PYA GVF V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:   18 QVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = -1
Query:  318 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 710
            R+  EL  L        SA P ++ ++ HW  TI GP D+ Y G  F +++ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:   32 RLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
The following BLAST results are available for this feature:
BLAST of CF832579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC13_ARATH1.987e-2338.03Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC9_SCHPO2.595e-2336.91SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBE2S_DROSI3.389e-2338.03Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE3.389e-2338.03Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME3.389e-2338.03Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBCX_DICDI4.426e-2340.28Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBE2S_NEMVE5.780e-2337.32Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBE2S_DROYA5.780e-2338.73Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER5.780e-2338.73Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBC11_SCHPO5.780e-2337.88Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832579 ID=CF832579; Name=CF832579; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTAGAAAGAAAGATTTTTATCATTCAGAATGGACGTAC
AAATTTGGCTGACCAAGTGACATTATCAGAACACATTTGATTGACCAAAG
TGACATTATCCATACAACAATTAAGAAGCAACCCGTTTCTCCTTTCCAAT
TCGGGGGATGTAGTGGACCTTTCTTATGGTCCACTTTTTAGGATTGAACA
GACAGAATATTCATACATTAACTCGAAACCAGAATTAAAAAGAAAAGGAA
CCCCCTCACACACCATAACCCAGGTTTAGCCCATGGCATACTTCTGGGTC
CAGCTCCTTGCAGTTGTCTCGTACTTGTTCCTGTCGGTCTTGTACATGTG
AGCAATTTCTGGTACCAACGGATCATCGGGATTTGGATCCGTCAATAATG
AACAGATTGATAGCAACACCTTGGAAATGGTAAGAGCAGGACTCCATTGT
TCCTTCAAGATGTCAAGGCAAATGCTCCCATTGCTATTTATGTTAGGATG
AAATACCTTTGTCCTGAATGCTACCTTGGGAGGCTTGAATGGATAGTCTG
GGGGAAAATGGATGGTAACTAGAAAAACACCCCCAGCATACGGACTATCT
GGAGGACCCATGATTGTCGCCTGCCAATGAAACATGTCTTCAGCAACAGG
ACCGGCACTGCATGATGTAGGAGGATCCTTCTGCAAATCTTTGAGCTCCT
TCAAGATCCG
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