CF832579

Overview
NameCF832579
Unique NameCF832579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = -1
Query:  258 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*TWVMVC 710
            RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E   +   +   +G T+   C
Sbjct:   33 RIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERC 181          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 58/153 (37.91%), Postives = 76/153 (49.67%), Query Frame = -1
Query:  282 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 710
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAV 255          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 58/153 (37.91%), Postives = 76/153 (49.67%), Query Frame = -1
Query:  282 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 710
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAV 255          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 58/153 (37.91%), Postives = 76/153 (49.67%), Query Frame = -1
Query:  282 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 710
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:  103 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAV 253          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 57/153 (37.25%), Postives = 76/153 (49.67%), Query Frame = -1
Query:  282 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 710
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAV 212          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 57/153 (37.25%), Postives = 76/153 (49.67%), Query Frame = -1
Query:  282 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 710
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAV 212          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = -1
Query:  285 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 647
            V ++M  +     GP ++PY+GG++ V +  P +YP+K P + F  ++FHPNI+  +GS+CLD++ + WSP   +  +  + +  LL  PN  DPL  E A +   + N Y    R +  +YA
Sbjct:   25 VNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = -1
Query:  282 RILKELKDLQKDPP----TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 710
            R+ KEL+DLQK+ P      CS     +++  W A ++ P   PY    F + I FP +YPF+PP V F T+++HPN++ +G +CL I+ K+ W  +    +VL ++  L+  P P  P+  E+A     D   ++  A+ +T ++ +
Sbjct:    6 RVAKELEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGV 149          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = -1
Query:  285 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 707
            ++KE+ +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+++Y      + ++YA
Sbjct:   37 LVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = -1
Query:  285 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 707
            ++KE+ +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+++Y      + ++YA
Sbjct:   37 LVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of CF832579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC12_BOVIN4.287e-1832.45NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBE2Z_RAT5.599e-1837.91Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE5.599e-1837.91Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN5.599e-1837.91Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBE2Z_XENTR7.312e-1837.25Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_XENLA7.312e-1837.25Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBC8_SCHPO7.312e-1834.15Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UB2L6_BOVIN9.550e-1832.43Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBE2F_XENTR1.247e-1733.11NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA1.247e-1733.11NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832579 ID=CF832579; Name=CF832579; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTAGAAAGAAAGATTTTTATCATTCAGAATGGACGTAC
AAATTTGGCTGACCAAGTGACATTATCAGAACACATTTGATTGACCAAAG
TGACATTATCCATACAACAATTAAGAAGCAACCCGTTTCTCCTTTCCAAT
TCGGGGGATGTAGTGGACCTTTCTTATGGTCCACTTTTTAGGATTGAACA
GACAGAATATTCATACATTAACTCGAAACCAGAATTAAAAAGAAAAGGAA
CCCCCTCACACACCATAACCCAGGTTTAGCCCATGGCATACTTCTGGGTC
CAGCTCCTTGCAGTTGTCTCGTACTTGTTCCTGTCGGTCTTGTACATGTG
AGCAATTTCTGGTACCAACGGATCATCGGGATTTGGATCCGTCAATAATG
AACAGATTGATAGCAACACCTTGGAAATGGTAAGAGCAGGACTCCATTGT
TCCTTCAAGATGTCAAGGCAAATGCTCCCATTGCTATTTATGTTAGGATG
AAATACCTTTGTCCTGAATGCTACCTTGGGAGGCTTGAATGGATAGTCTG
GGGGAAAATGGATGGTAACTAGAAAAACACCCCCAGCATACGGACTATCT
GGAGGACCCATGATTGTCGCCTGCCAATGAAACATGTCTTCAGCAACAGG
ACCGGCACTGCATGATGTAGGAGGATCCTTCTGCAAATCTTTGAGCTCCT
TCAAGATCCG
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