CF832588

Overview
NameCF832588
Unique NameCF832588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 91/172 (52.91%), Postives = 117/172 (68.02%), Query Frame = -2
Query:  180 YAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 692
            YAWGYCY+R Q +P S                    PIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  163 YAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = -2
Query:  204 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP-IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYG 692
            YAWGYC++++ +P+S+                     +QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG   N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:   80 YAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.684e-49
Identity = 90/174 (51.72%), Postives = 118/174 (67.82%), Query Frame = -2
Query:  171 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 692
            YAWGYC++R+ +P++                    PIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  154 YAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = -2
Query:  171 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 692
            YAWGYC++R+ +P++                    PIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  153 YAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/163 (54.60%), Postives = 111/163 (68.10%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP-IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            Y+WGYC+ ++ +PAS                      +QL+WN NY  CG A+GVDLLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG   +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  164 YSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48
Identity = 90/172 (52.33%), Postives = 116/172 (67.44%), Query Frame = -2
Query:  180 YAWGYCYIRQV-SPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 692
            YAWGYC++R+  +P                      PIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  157 YAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.602e-46
Identity = 83/163 (50.92%), Postives = 111/163 (68.10%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP-IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            Y+WGYC+ ++ +P+S+                     +QL+WN NY +CG A+G DLLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG   +  V +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  149 YSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46
Identity = 88/172 (51.16%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  180 YAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 692
            YAWGYCY+R Q SP +                    PIQ+++N NY + G+A+GVDL+NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG      V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  143 YAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46
Identity = 87/169 (51.48%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  189 YAWGYCYIRQV-SPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNLMA 692
            Y+WGYC+  ++ + AS                    PIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+  +  V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  164 YSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 86/167 (51.50%), Postives = 105/167 (62.87%), Query Frame = -2
Query:  195 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNL 692
            YAWGYCY+++++                       PIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECG  G N A  +RIGF+  +C   G   G NLDC  QRP+G  L
Sbjct:  167 YAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
The following BLAST results are available for this feature:
BLAST of CF832588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI3_TOBAC4.505e-4952.91Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIT_CARPA5.884e-4953.66Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIT_PHAVU7.684e-4951.72Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU1.311e-4851.72Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIB_ARATH2.920e-4854.60Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_SOLTU8.496e-4852.33Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_BRANA1.602e-4650.92Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_VITVI4.662e-4651.16Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI9_ORYSJ4.662e-4651.48Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR6.732e-4551.50Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832588 ID=CF832588; Name=CF832588; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCAGTCTTATCC
TTTTTAACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACC
TACAAGTGTGACATCTAAAGTTTTTATTAAGCTAGCTTTTATTAAGCTTA
TTTTACTAAAACGGTGATCATGATGATCACATAGATTGTGCCATCAAATT
AAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGGAAAGAACCCAATACGGTTACGTACA
GCGACATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATG
GTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGT
GCAGTCATCCAAAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGT
GGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGC
ACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCCGCCATAG
TATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAGTCGGACGA
CGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATATTCT
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