CF832588

Overview
NameCF832588
Unique NameCF832588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 85/164 (51.83%), Postives = 107/164 (65.24%), Query Frame = -2
Query:  204 YAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYG 692
            Y+WGYCY R Q SP                      PIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:   83 YSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.828e-43
Identity = 82/164 (50.00%), Postives = 105/164 (64.02%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP--IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            Y+WGYC+  + +  +                       IQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  154 YSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 82/162 (50.62%), Postives = 106/162 (65.43%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            YAWGYC++ + +                       PIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+  +  V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  158 YAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.404e-42
Identity = 82/163 (50.31%), Postives = 105/163 (64.42%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP-IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            ++WGYC+ ++ +P S                      IQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+  +  V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  167 FSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.404e-42
Identity = 77/164 (46.95%), Postives = 110/164 (67.07%), Query Frame = -2
Query:  204 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGY-VGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYG 692
            +AWGYC + +++P+                      IQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG        ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  104 FAWGYCRVNEITPSDPPYYGRGP-------------IQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.127e-42
Identity = 83/145 (57.24%), Postives = 100/145 (68.97%), Query Frame = -2
Query:  261 YAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCG 692
            YAWGYC++R Q SP                      PIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +CG
Sbjct:  157 YAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.084e-42
Identity = 84/164 (51.22%), Postives = 106/164 (64.63%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP--IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +AWGYC+ +Q   A++D                     IQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  103 FAWGYCF-KQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.084e-42
Identity = 81/164 (49.39%), Postives = 106/164 (64.63%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +  GYC++RQ+  +                     PIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  101 FTGGYCFVRQIDQSDR--------------YYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.098e-42
Identity = 85/164 (51.83%), Postives = 106/164 (64.63%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP--IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +AWGYC+ +Q   ASSD                     IQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  103 FAWGYCF-KQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.188e-41
Identity = 82/163 (50.31%), Postives = 104/163 (63.80%), Query Frame = -2
Query:  207 EYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 695
            ++ WGYC+  +++ A+S                    IQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG   N A  +RIG++  +C   G   G NLDC NQR +
Sbjct:  109 QFQWGYCFKEEINKATSPPYYGRGP------------IQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
The following BLAST results are available for this feature:
BLAST of CF832588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHID_SOLLC8.792e-4551.83Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI3_ORYSJ2.828e-4350.00Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA3.694e-4350.62Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_ORYSJ1.404e-4250.31Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ1.404e-4246.95Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI4_SOLTU3.127e-4257.24Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SECCE4.084e-4251.22Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SOLCI4.084e-4249.39Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_HORVU9.098e-4251.8326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI8_ORYSJ1.188e-4150.31Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832588 ID=CF832588; Name=CF832588; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCAGTCTTATCC
TTTTTAACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACC
TACAAGTGTGACATCTAAAGTTTTTATTAAGCTAGCTTTTATTAAGCTTA
TTTTACTAAAACGGTGATCATGATGATCACATAGATTGTGCCATCAAATT
AAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGGAAAGAACCCAATACGGTTACGTACA
GCGACATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATG
GTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGT
GCAGTCATCCAAAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGT
GGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGC
ACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCCGCCATAG
TATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAGTCGGACGA
CGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATATTCT
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