CF832588

Overview
NameCF832588
Unique NameCF832588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 82/164 (50.00%), Postives = 107/164 (65.24%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP--IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +AWGYC+ +Q   A+S+                     IQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  155 FAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.515e-41
Identity = 82/162 (50.62%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +A GYC++R+ +   S                    IQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG   N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:   96 FAGGYCFVREGNQMGSGFYGRGP-------------IQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 82/164 (50.00%), Postives = 106/164 (64.63%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP--IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +AWGYC+ +Q   A+S+                     IQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  158 FAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 82/163 (50.31%), Postives = 103/163 (63.19%), Query Frame = -2
Query:  204 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYG 692
            +  GYC++RQ   +                     PIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG   N AV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  103 FTGGYCFVRQNDQSDR--------------YYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.716e-40
Identity = 77/165 (46.67%), Postives = 105/165 (63.64%), Query Frame = -2
Query:  207 YAWGYCYIRQVSP-ASSDXXXXXXXXXXXXXXXXXXP--IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            Y+WGYC+  + +    SD                     IQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  157 YSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 78/164 (47.56%), Postives = 103/164 (62.80%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +  GYC+++Q+  +                     PIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  101 FTGGYCFVKQIEQSDR--------------YYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 81/162 (50.00%), Postives = 100/162 (61.73%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            +  GYC++RQ   +                     PIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  103 FTGGYCFVRQNDQSDR--------------YYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 77/166 (46.39%), Postives = 102/166 (61.45%), Query Frame = -2
Query:  204 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP---IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYG 692
            YAWGYC+  +   A+                        IQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  160 YAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = -2
Query:  192 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPYGLNLM 569
            N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG  G N A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  171 NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 79/162 (48.77%), Postives = 99/162 (61.11%), Query Frame = -2
Query:  207 YAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDCSNQRPY 692
            YA GYC++R+ +   +                    IQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG   N  V +RIG++        + PGDNLDC NQR +
Sbjct:  103 YAGGYCFLREGNQMGNGYYGRGP-------------IQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
The following BLAST results are available for this feature:
BLAST of CF832588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_HORVU2.647e-4150.0026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIB_SOLLC4.515e-4150.62Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SECCE5.897e-4150.00Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIQ_TOBAC1.314e-4050.31Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI1_ORYSJ1.716e-4046.67Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLLC2.241e-4047.56Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC1.897e-3950.00Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI12_ORYSJ1.897e-3946.39Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_POPTR3.236e-3958.27Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_PETHY2.097e-3848.77Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832588 ID=CF832588; Name=CF832588; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCAGTCTTATCC
TTTTTAACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACC
TACAAGTGTGACATCTAAAGTTTTTATTAAGCTAGCTTTTATTAAGCTTA
TTTTACTAAAACGGTGATCATGATGATCACATAGATTGTGCCATCAAATT
AAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGGAAAGAACCCAATACGGTTACGTACA
GCGACATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATG
GTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGT
GCAGTCATCCAAAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGT
GGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGC
ACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCCGCCATAG
TATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAGTCGGACGA
CGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATATTCT
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