CF832588

Overview
NameCF832588
Unique NameCF832588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 48/154 (31.17%), Postives = 72/154 (46.75%), Query Frame = -2
Query:  225 CYIRQVSPASSDXXXXXXXXXXXXXXXXXXP---IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDC 677
            CYI +++ A+ D                      +Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  153 CYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = -2
Query:  225 YCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP---IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDC 680
            +CYI +++ AS D                      IQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 45/154 (29.22%), Postives = 73/154 (47.40%), Query Frame = -2
Query:  225 YCYIRQVSPASS--DXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDC 680
            +CYI +++ +++  D                  P+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  137 FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 46/156 (29.49%), Postives = 69/156 (44.23%), Query Frame = -2
Query:  225 YCYIRQVSPASSDXXXXXXXXXXXXXXXXXXP----IQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDC 680
            +CYI ++  AS D                       IQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++  +C + G+  GDNL C
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 42/154 (27.27%), Postives = 72/154 (46.75%), Query Frame = -2
Query:  225 YCYIRQVSPASS--DXXXXXXXXXXXXXXXXXXPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNVAVRNRIGFFPTFCGKFGIQPGDNLDC 680
            +CYI +++ +++  D                  P+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:  148 FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CF832588 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -2
Query:  321 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 458
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CF832588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ2.041e-1731.17Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA3.481e-1730.32Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE3.259e-1529.22Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.238e-1429.49Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_MAIZE8.026e-1427.27Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY1.674e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832588 ID=CF832588; Name=CF832588; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCAGTCTTATCC
TTTTTAACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACC
TACAAGTGTGACATCTAAAGTTTTTATTAAGCTAGCTTTTATTAAGCTTA
TTTTACTAAAACGGTGATCATGATGATCACATAGATTGTGCCATCAAATT
AAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGGAAAGAACCCAATACGGTTACGTACA
GCGACATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATG
GTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGT
GCAGTCATCCAAAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGT
GGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGC
ACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCCGCCATAG
TATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAGTCGGACGA
CGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATATTCT
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