CF832590

Overview
NameCF832590
Unique NameCF832590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  153 STIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  153 STIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  153 STIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 38/65 (58.46%), Postives = 56/65 (86.15%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +TVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK WQN++ LY+K++MGPS+R++
Sbjct:  153 STVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  153 STIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  153 STIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  153 STIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.969e-18
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ M E ++  N+ ++VNFLVSLLKKNWQNVR LY+KS+MG   R++
Sbjct:  152 STIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRLY 216          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 5.064e-18
Identity = 38/65 (58.46%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  153 STIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.064e-18
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            ATVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKNWQNVR L +KSTMG   R++
Sbjct:  152 ATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216          
The following BLAST results are available for this feature:
BLAST of CF832590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL10A_RAT2.273e-1860.0060S ribosomal protein L10a OS=Rattus norvegicus GN... [more]
RL10A_MOUSE2.273e-1860.0060S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]
RL10A_HUMAN2.273e-1860.0060S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_DICDI2.273e-1858.4660S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_CANGA2.273e-1864.6260S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL10A_BOVIN2.273e-1860.0060S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_ASHGO2.273e-1864.6260S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL10A_ICTPU2.969e-1860.0060S ribosomal protein L10a OS=Ictalurus punctatus ... [more]
RL10A_MACFA5.064e-1858.4660S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_CAEEL5.064e-1860.0060S ribosomal protein L10a OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832590 ID=CF832590; Name=CF832590; organism=Citrus sinensis; type=EST; length=429bp
TTTTTTTTTTTTTTTAACAGAAAGCAATCATGATTCAATTCAACATCTCT
CCAACAAAAAAATTCGTACAAGTCTACCATATTATAAGATTACTAGTGCA
TTAAATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATTGCAGGTTGTGA
CCATTCAAAGAAAGACATTTTGGGTATAATAAGATCACACTAGGTTTTCC
CTACAAAACTCCAACATAAAGCAGAATTTCTTAAAAGATGCGGTTTGAAG
GACCCATGGTACTCTTCAGATAGAGGCACCTGACATTCTGCCAGTTTTTC
TTCAACAATGAGACAAGGAAGTTAACACTCATTTGAACATTCTGGAAGAT
CTGCTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCCCATGCAAAGCA
CCTTCTTCAATTGGAACTTCACTGTTGCC
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