CF832590

Overview
NameCF832590
Unique NameCF832590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.638e-18
Identity = 39/65 (60.00%), Postives = 54/65 (83.08%), Query Frame = -2 
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK WQN+  L +KSTMG  +R++
Sbjct:  152 STIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
[Close]
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = -2 
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKKNWQNV  L +KS+MGP+ R++
Sbjct:  153 STIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
[Close]
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.924e-17
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = -2 
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+TM P  R++
Sbjct:  153 STIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217
[Close]
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = -2 
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK WQN+  L +KSTMG   R++
Sbjct:  152 STIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
The following BLAST results are available for this feature:
BLAST of CF832590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL1B_SCHPO8.638e-1860.0060S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]
RL1_YEAST1.473e-1763.0860S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL10A_NEUCR1.924e-1758.4660S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL1A_SCHPO7.313e-1758.4660S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832590 ID=CF832590; Name=CF832590; organism=Citrus sinensis; type=EST; length=429bp
TTTTTTTTTTTTTTTAACAGAAAGCAATCATGATTCAATTCAACATCTCT
CCAACAAAAAAATTCGTACAAGTCTACCATATTATAAGATTACTAGTGCA
TTAAATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATTGCAGGTTGTGA
CCATTCAAAGAAAGACATTTTGGGTATAATAAGATCACACTAGGTTTTCC
CTACAAAACTCCAACATAAAGCAGAATTTCTTAAAAGATGCGGTTTGAAG
GACCCATGGTACTCTTCAGATAGAGGCACCTGACATTCTGCCAGTTTTTC
TTCAACAATGAGACAAGGAAGTTAACACTCATTTGAACATTCTGGAAGAT
CTGCTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCCCATGCAAAGCA
CCTTCTTCAATTGGAACTTCACTGTTGCC
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