CF832591

Overview
NameCF832591
Unique NameCF832591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18
Identity = 39/66 (59.09%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            ++T+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGP  +++
Sbjct:  152 KATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217
[Close]
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18
Identity = 39/66 (59.09%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            R+TVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKNWQNVR L +KSTMG   R++
Sbjct:  151 RATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
[Close]
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+TM P  R++
Sbjct:  152 KSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217
[Close]
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.028e-17
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK WQN+  L +KSTMG   R++
Sbjct:  151 KSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
The following BLAST results are available for this feature:
BLAST of CF832591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL10A_SPOFR3.129e-1859.0960S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_CAEEL3.129e-1859.0960S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_NEUCR5.338e-1859.0960S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL1A_SCHPO2.028e-1759.0960S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832591 ID=CF832591; Name=CF832591; organism=Citrus sinensis; type=EST; length=432bp
CGGTCAACAGTGAAGTTCCAATTGAAGAAGGTGCTTTGCATGGGAGTTGC
TGTTGGAAACCTTTCAATGGAGGAGAAGCAGATCTTCCAGAATGTTCAAA
TGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAAAAACTGGCAGAATGTC
AGGTGCCTCTATCTGAAGAGTACCATGGGTCCTTCAAACCGCATCTTTTA
AGAAATTCTGCTTTATGTTGGAGTTTTGTAGGGAAAACCTAGTGTGATCT
TATTATACCCAAAATGTCTTTCTTTGAATGGTCACAACCTGCAATTTTCT
TTTTCTTTTTCTTTTTCTTTTCTGAATTTAATGCACTAGTAATCTTATAA
TATGGTAGACTTGTACGAATTTTTTTGTTGGAGAGATGTTGAATTGAATC
ATGATTGCTTTCTGTTAAAAAAAAAAAAAAAA
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