CF832596

Overview
NameCF832596
Unique NameCF832596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.160e-56
Identity = 112/192 (58.33%), Postives = 137/192 (71.35%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K+RL++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    3 TILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_SPOFR (60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.051e-55
Identity = 107/187 (57.22%), Postives = 140/187 (74.87%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            I++++ ++IPEG+ V + ++++ V+GPRG L RNFKHL +D  ++       R LK++ WFGS+K  AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN      +  IEIRNFLGEK +RRV+M  GVTV+ S K KDELI++GN +E VS SAALI Q   VKNKDIRKFLDG+YVSEK T+
Sbjct:    4 IVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 185          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 6.811e-55
Identity = 107/189 (56.61%), Postives = 139/189 (73.54%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIV 572
            TI S++ ++IP+ +K  + A+++ + G RG L R+FKHL LD ++       KR LK++ WFG++K  AA+RT  SH++N+I GVT G++YKMR VYAHFPIN   +  +  IEIRNFLGEK +RRVEM  GVTV+ S   KDELI++GNDIE VS SAALI Q   VKNKDIRKFLDG+YVSEK T+V
Sbjct:    3 TINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYM-----PDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.678e-53
Identity = 98/187 (52.41%), Postives = 137/187 (73.26%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            I SS  ++IPE V V +  + ++V GPRG LS++F H ++D +L+     GK+ L +D WFG+RK  A I+T  S ++N+ITGVTKGY YKMRFVYAHFPIN ++ +  + +EIRNF GEK VRR+E+LDG+T  R++K KDE++L GN +EL+S+S A I  +  +K KD+RKFLDGIYVSE+  +
Sbjct:    4 INSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 185          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.018e-50
Identity = 99/191 (51.83%), Postives = 136/191 (71.20%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            I S++T+  PEGV   +  +I+ V GPRG + ++F+HL+++   +     GK  L++  WFG RK  AAIRT  SH++N+I GVT G+RYKMR VYAHFPIN ++ + ++++EIRNFLGEK VRRV + +GV    S   KDE++++GND++ VS++AA I Q   VK KDIRKFLDGIYVSEK TIV  D
Sbjct:    4 IESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI-----GKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.329e-50
Identity = 103/190 (54.21%), Postives = 136/190 (71.58%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANAD--KSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIV 572
            I + + +EIPEGV V I ++I++V GPRG L++N KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   D  K IE+RNFLG+KK+R V + DGVT+  S  VKDE++L GN +E VS++AA + Q C V+NKDIRKFLDGIYVS KG IV
Sbjct:    4 IQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFT-----KVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.051e-50
Identity = 101/189 (53.44%), Postives = 135/189 (71.43%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANAD--KSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            I + + +E+PEGV V I ++I++V GPRG L++N KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   D  K IE+RNFLG+KK+R V + DGVT+  S  VKDE++L GN +E VS++AA + Q C V+NKDIRKFLDGIYVS KG I
Sbjct:    4 IQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFT-----KVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.507e-49
Identity = 102/187 (54.55%), Postives = 130/187 (69.52%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            I   ET+ IPEGV V I A+++ V+GPRG L +N + +  D  L   G T    +K   W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++      +EIRNFLGE+  R ++ L GVTV  S  VKDE+I++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+G I
Sbjct:    5 IYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRV--DIELKKQGNT----IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.728e-48
Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            I   ET+ IP+GV V I A+ + V GPRG L +N +H+  D  +   G T    +K   W GSRK +A IR+  S + N+I GVT+G+RYKMR VYAHFPIN ++      +EIRNFLGE+  R ++ L GVTV  S  VKDE+IL+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+G I
Sbjct:    5 IYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHV--DIEMKKQGNT----IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 81/183 (44.26%), Postives = 125/183 (68.31%), Query Frame = 3
Query:   18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563
            +E + +PEGV+V I+   + V+GP+G+L+R+F H       + + E GK+ + ++A+F +R+  A + T  +H++N+ITGVTKG+RYK++ VY+HFP+   +   DK + I NFLGEK  R  +++ GVTV    KV KD++I++G DIE V ++AA I Q   VK+KD R F+DGIY+ EKG
Sbjct:    8 AEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEGKK-VVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKV-QGDK-VVIENFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEKG 183          
The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_PONAB6.160e-5658.3360S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_SPOFR1.051e-5557.2260S ribosomal protein L9 OS=Spodoptera frugiperda ... [more]
RL9_DROME6.811e-5556.6160S ribosomal protein L9 OS=Drosophila melanogaste... [more]
RL9_DICDI1.678e-5352.4160S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL1.018e-5051.8360S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_YEAST1.329e-5054.2160S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST5.051e-5053.4460S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL9B_SCHPO2.507e-4954.5560S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO4.728e-4853.4860S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL6_HYPBU1.092e-3644.2650S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bp
CGGTGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATCAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTATTTTTTT
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