CF832596

Overview
NameCF832596
Unique NameCF832596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.518e-33
Identity = 69/175 (39.43%), Postives = 114/175 (65.14%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 551
            +++PEGV+V++    ++V GP+G+L R+F H      +    E GK+++ ++ +F +RK  A + T  +H++N+ITGVTKG+RYKM+ V++HFPI+  +      +EI NF+GEK  R  ++L GVTV    +   ++I++G DIE V+++AA I Q   +   D R F+DGIY+
Sbjct:   11 VDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVG--DRVEIHNFIGEKAPRVAKVLPGVTVKVQGR---DVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 63/126 (50.00%), Postives = 90/126 (71.43%), Query Frame = 3
Query:   15 SSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEM 392
            S++T++ P+GV   +  +++ V GPRG L R+F+HL+++         GK +L++  WFG RK  AAIRT  SH+QN+I GVTKG+RYKMR VYAHFPIN ++ +  +++EIRNFLGEK VR V +
Sbjct:    6 SNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEME-----RVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 69/182 (37.91%), Postives = 113/182 (62.09%), Query Frame = 3
Query:   18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563
            +E +EIPE V V+++   + V+GP+G ++R+F H    F  + D     R + ++ +   RK  A + T  +H++N+ITGV +GYRYK++ +++HFPI  S+   +K + IRNF+GEK  R  ++   V V  S    +++I++G DIE V  +AA I +   V ++D R F+DGIY+ EKG
Sbjct:    8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKG 181          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 70/181 (38.67%), Postives = 113/181 (62.43%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563
            E ++IPE V V+IN   ++V GP+G + R+F H+    +++   E  K  + ++ +F  R+  A + T  SH++N+I GV KGYRYK++ +Y+HFPI   + + ++ + I+NFLGEK   R+  + G  V  + K +D +I++G DIE V ++AA I     VK+KD R F DGIY+ + G
Sbjct:    9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-DRIAKIIGEDVKVTVKGED-IIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYIYDWG 182          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.868e-28
Identity = 63/187 (33.69%), Postives = 111/187 (59.36%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGE 578
            E +EIP+G+ V I    I+V+GP+G++ ++F H++       +      ++ ++  F  R+  A   + ++H++N+ TGVTKGYRY ++ +Y HFP+   ++     ++I+N +GEK +RR +++ GV V     VK +++I++G DIE V ++AA I     +   D R F DGIY+ +K  I  E
Sbjct:    8 EEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-----GIEIRKEDNKIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSG--NEVQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSE 183          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 70/184 (38.04%), Postives = 112/184 (60.87%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            E +E+PEGV V I+   ++V GP+G++ R+F H       + D       + ++++F   +  A +     H++N+I GV  G+RYK++ +Y+HFPIN  +   DK I I NFLGEK +R   ++ GV V    +VK  ++I++G D+E V+++AA I     VK+KD RKF+DGIY+ E+  I
Sbjct:    9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.065e-27
Identity = 72/181 (39.78%), Postives = 108/181 (59.67%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E +EIPEGV+V +    ++V+GP+G+L R  K+  +        E GK  + I   F  +K  A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +   +  + I NFLGEK  RR ++L GVTV    KVK  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIFT----EDGK--VVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDE--VVIENFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 72/180 (40.00%), Postives = 105/180 (58.33%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E +EIPEGV+V I   +++V GP+G+L R  K+  +        E GK  + I   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +   +  + I NFLGEK  RR ++L GVTV     +  E+I++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIFT----EDGK--VVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDE--VVIENFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 75/181 (41.44%), Postives = 107/181 (59.12%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E +EIPEGV+V +    ++V+GP+G++ R      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +   +  IE  NFLGEK  RR ++L GVTV    KVK  E+I++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27
Identity = 72/181 (39.78%), Postives = 107/181 (59.12%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E +EIPEGV+V +   +++V+GP+G+L R  K+  +        E GK  + +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +   +  IE  NFLGEK  RR ++L GVTV    KV+  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIFT----EDGK--VVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_IGNH42.518e-3339.4350S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL9_HAECO4.749e-3250.0060S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_DESK16.858e-3137.9150S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_STAMF9.903e-3038.6750S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_SULTO1.868e-2833.6950S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_AERPE4.161e-2838.0450S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_PYRKO2.065e-2739.7850S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_THEON2.697e-2740.0050S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_PYRAB2.697e-2741.4450S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]
RL6_THEGJ6.008e-2739.7850S ribosomal protein L6P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bp
CGGTGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATCAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTATTTTTTT
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