CF832596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.518e-33 Identity = 69/175 (39.43%), Postives = 114/175 (65.14%), Query Frame = 3 Query: 27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 551 +++PEGV+V++ ++V GP+G+L R+F H + E GK+++ ++ +F +RK A + T +H++N+ITGVTKG+RYKM+ V++HFPI+ + +EI NF+GEK R ++L GVTV + ++I++G DIE V+++AA I Q + D R F+DGIY+ Sbjct: 11 VDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVG--DRVEIHNFIGEKAPRVAKVLPGVTVKVQGR---DVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32 Identity = 63/126 (50.00%), Postives = 90/126 (71.43%), Query Frame = 3 Query: 15 SSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEM 392 S++T++ P+GV + +++ V GPRG L R+F+HL+++ GK +L++ WFG RK AAIRT SH+QN+I GVTKG+RYKMR VYAHFPIN ++ + +++EIRNFLGEK VR V + Sbjct: 6 SNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEME-----RVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31 Identity = 69/182 (37.91%), Postives = 113/182 (62.09%), Query Frame = 3 Query: 18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563 +E +EIPE V V+++ + V+GP+G ++R+F H F + D R + ++ + RK A + T +H++N+ITGV +GYRYK++ +++HFPI S+ +K + IRNF+GEK R ++ V V S +++I++G DIE V +AA I + V ++D R F+DGIY+ EKG Sbjct: 8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKG 181
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30 Identity = 70/181 (38.67%), Postives = 113/181 (62.43%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563 E ++IPE V V+IN ++V GP+G + R+F H+ +++ E K + ++ +F R+ A + T SH++N+I GV KGYRYK++ +Y+HFPI + + ++ + I+NFLGEK R+ + G V + K +D +I++G DIE V ++AA I VK+KD R F DGIY+ + G Sbjct: 9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-DRIAKIIGEDVKVTVKGED-IIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYIYDWG 182
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.868e-28 Identity = 63/187 (33.69%), Postives = 111/187 (59.36%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGE 578 E +EIP+G+ V I I+V+GP+G++ ++F H++ + ++ ++ F R+ A + ++H++N+ TGVTKGYRY ++ +Y HFP+ ++ ++I+N +GEK +RR +++ GV V VK +++I++G DIE V ++AA I + D R F DGIY+ +K I E Sbjct: 8 EEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-----GIEIRKEDNKIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSG--NEVQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSE 183
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28 Identity = 70/184 (38.04%), Postives = 112/184 (60.87%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569 E +E+PEGV V I+ ++V GP+G++ R+F H + D + ++++F + A + H++N+I GV G+RYK++ +Y+HFPIN + DK I I NFLGEK +R ++ GV V +VK ++I++G D+E V+++AA I VK+KD RKF+DGIY+ E+ I Sbjct: 9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.065e-27 Identity = 72/181 (39.78%), Postives = 108/181 (59.67%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E +EIPEGV+V + ++V+GP+G+L R K+ + E GK + I F +K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + + I NFLGEK RR ++L GVTV KVK E+ ++G D E V ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIFT----EDGK--VVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDE--VVIENFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27 Identity = 72/180 (40.00%), Postives = 105/180 (58.33%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E +EIPEGV+V I +++V GP+G+L R K+ + E GK + I F +K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + + I NFLGEK RR ++L GVTV + E+I++G D E V ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIFT----EDGK--VVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDE--VVIENFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27 Identity = 75/181 (41.44%), Postives = 107/181 (59.12%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E +EIPEGV+V + ++V+GP+G++ R + + E GK + D F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK RR ++L GVTV KVK E+I++G D E V ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.008e-27 Identity = 72/181 (39.78%), Postives = 107/181 (59.12%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E +EIPEGV+V + +++V+GP+G+L R K+ + E GK + + F +K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK RR ++L GVTV KV+ E+ ++G D E V ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIFT----EDGK--VVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177 The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bpback to top |