CF832596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26 Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E +EIPEGV+V + ++V+GP+G+L R F + E G + D F RK A RT +H++N+I GVT+G+ YK++ VY+HFPI+ + + IE NFLGEK R+ ++L GVTV KV+ E+I++G D E V ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26 Identity = 59/187 (31.55%), Postives = 110/187 (58.82%), Query Frame = 3 Query: 9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569 ++ E +EIP+ V V + II+++GP+G++ ++F + DG ++ ++ F +R+ A + +SH++N+ITGVTKGYRY ++ +Y HFP + + ++I N +GEK RR ++L+GV V ++++++G ++E V+++AA I + D R F DGI++ +K I Sbjct: 4 VILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAK-GIQISLDGN----KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVG--NEVQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26 Identity = 73/181 (40.33%), Postives = 106/181 (58.56%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E +EIPEGV+V + ++V+GP+G++ + + + E GK + D F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK RR ++L GVTV KVK E+I++G D E ++AA I Q + D R F DGIY+ EK Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26 Identity = 72/186 (38.71%), Postives = 105/186 (56.45%), Query Frame = 3 Query: 3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 V L E +EIPE V V++N + V+ +L R+ + ++ E GK + I+ F + +A + T SH+QN+ITGVT G+ YK+ YAHFP+ S ++ I NFLGEK R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 3 VAALIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIST----EDGK--VVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26 Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 3 Query: 3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 V L E +EIPE V V+IN + V+ +L R+ + ++ E GK + I+ F + +A + T SH+QN+ITGVT G+ YK+ YAHFP+ S ++ I NFLGEK R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 3 VAALIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIST----EDGK--VVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.676e-26 Identity = 67/184 (36.41%), Postives = 107/184 (58.15%), Query Frame = 3 Query: 27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDG-----ETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 +E+P+GV V ++ + +G +G++SR F+ + + TDG ETGK ++T A + T SH++N++TGV++GY Y M+ VYAHFPI + DK + I NFLGE+K R ++ V ++ DKV +L G + E + ++AA I Q C ++ +D R F DGIY++ K Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGGKVIVETGK---------DDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSK 176
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.297e-25 Identity = 71/186 (38.17%), Postives = 104/186 (55.91%), Query Frame = 3 Query: 3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 V L E +EIPE V V+IN + V+ +L R + ++ E GK + I+ F + +A + T SH+QN+ITGVT G+ YK+ YAHFP+ S ++ I NFLGEK R +++DGVTV S +++++ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 3 VAALIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIST----EDGK--VVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.306e-25 Identity = 64/178 (35.96%), Postives = 106/178 (59.55%), Query Frame = 3 Query: 27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 ++IP+GV V+I+ + + V+GP+G+LSR + +++ + ++ I + ++ A + T +H++N+I GVT G+ Y+MR VY+HFPI + AD + I NFLGE+K R ++ V V + KDE+++ G D E V ++ A I Q V+ D+R F DGIY+ EK Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.636e-24 Identity = 71/186 (38.17%), Postives = 103/186 (55.38%), Query Frame = 3 Query: 3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 V L E +EIP V V+IN + V+ +L R+ + ++ E GK + I+ F + +A + T SH+QN+I GVT G+ YK+ YAHFP+ S ++ I NFLGEK R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 3 VAALIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIST----EDGK--VVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.137e-24 Identity = 68/180 (37.78%), Postives = 102/180 (56.67%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E ++IPE V+V+IN + V+ +L R F+H + D + I + RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ + IE NFLGEK RR +++GVTV S +++I+ G D E V ++AA I Q +K +D R F DGIY+ EK Sbjct: 9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGD------EIVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEK 177 The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bpback to top |