CF832596

Overview
NameCF832596
Unique NameCF832596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E +EIPEGV+V +    ++V+GP+G+L R F    +        E G   +  D  F  RK  A  RT  +H++N+I GVT+G+ YK++ VY+HFPI+  +   +  IE  NFLGEK  R+ ++L GVTV    KV+  E+I++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 59/187 (31.55%), Postives = 110/187 (58.82%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            ++  E +EIP+ V V +   II+++GP+G++ ++F        +  DG     ++ ++  F +R+  A   + +SH++N+ITGVTKGYRY ++ +Y HFP +  +      ++I N +GEK  RR ++L+GV V       ++++++G ++E V+++AA I     +   D R F DGI++ +K  I
Sbjct:    4 VILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAK-GIQISLDGN----KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVG--NEVQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 73/181 (40.33%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E +EIPEGV+V +    ++V+GP+G++ +      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +   +  IE  NFLGEK  RR ++L GVTV    KVK  E+I++G D E   ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 72/186 (38.71%), Postives = 105/186 (56.45%), Query Frame = 3
Query:    3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            V  L  E +EIPE V V++N   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    3 VAALIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIST----EDGK--VVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 3
Query:    3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            V  L  E +EIPE V V+IN   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    3 VAALIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIST----EDGK--VVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.676e-26
Identity = 67/184 (36.41%), Postives = 107/184 (58.15%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDG-----ETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +E+P+GV V ++   +  +G +G++SR F+   +   + TDG     ETGK           ++T A + T  SH++N++TGV++GY Y M+ VYAHFPI   +   DK + I NFLGE+K R   ++    V ++ DKV    +L G + E + ++AA I Q C ++ +D R F DGIY++ K
Sbjct:    9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGGKVIVETGK---------DDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSK 176          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.297e-25
Identity = 71/186 (38.17%), Postives = 104/186 (55.91%), Query Frame = 3
Query:    3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            V  L  E +EIPE V V+IN   + V+    +L R   +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +++++ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    3 VAALIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIST----EDGK--VVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.306e-25
Identity = 64/178 (35.96%), Postives = 106/178 (59.55%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            ++IP+GV V+I+ + + V+GP+G+LSR   + +++       +    ++ I +    ++  A + T  +H++N+I GVT G+ Y+MR VY+HFPI   +  AD  + I NFLGE+K R   ++  V V   +  KDE+++ G D E V ++ A I Q   V+  D+R F DGIY+ EK
Sbjct:    9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.636e-24
Identity = 71/186 (38.17%), Postives = 103/186 (55.38%), Query Frame = 3
Query:    3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            V  L  E +EIP  V V+IN   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+I GVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    3 VAALIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIST----EDGK--VVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.137e-24
Identity = 68/180 (37.78%), Postives = 102/180 (56.67%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E ++IPE V+V+IN   + V+    +L R F+H  +      D       + I   +  RK  A + T  +H+ N+I GVT+G+ YK++  YAHFP+  S+   +  IE  NFLGEK  RR  +++GVTV  S    +++I+ G D E V ++AA I Q   +K +D R F DGIY+ EK
Sbjct:    9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGD------EIVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEK 177          
The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_PYRFU2.283e-2640.8850S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_SULSO3.894e-2631.5550S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_PYRHO6.643e-2640.3350S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_METM76.643e-2638.7150S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM56.643e-2639.2550S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_UNCMA8.676e-2636.4150S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_METMP3.297e-2538.1750S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METTP4.306e-2535.9650S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_METM61.636e-2438.1750S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METJA2.137e-2437.7850S ribosomal protein L6P OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bp
CGGTGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATCAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTATTTTTTT
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