CF832596

Overview
NameCF832596
Unique NameCF832596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 69/184 (37.50%), Postives = 105/184 (57.07%), Query Frame = 3
Query:   12 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            L  E + IP+GV V I+  +  V+GP+ +LSR F H  +   +  D      ++ ++  F  +K  A I T  +H+ N+ITGVT+G+RY+M+ VYAHFP++  +A  DK + I NFLGE+  R    +    V    +VK DE+ + G + E V ++ A I Q   +K +D R F DGIY+  K
Sbjct:    6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVA-GDK-VVIENFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            + T+EIPEGV V ++  +   +GP+G + R F +  +   +  +GE     + +DA    ++  A + T  SH++NLI GV++G+  KM  VYAHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+++ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVR-EGE-----VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKVEG--KTLVIGNFLGEKKPRIAKILGETKVKVSG---NEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.809e-23
Identity = 54/183 (29.51%), Postives = 109/183 (59.56%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            E ++IP+ VKV +   +++V+GP+G++ ++F +       + +G     ++ ++  F  R+  A + + ++H++N+ITG   GYRY ++ +  HFPI+  ++  +  +++ N +GEK +RR ++L GV V       ++++++G+DI  V+++AA I     +   D R F DGIY+ +K  I
Sbjct:   11 EEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23
Identity = 67/180 (37.22%), Postives = 103/180 (57.22%), Query Frame = 3
Query:   21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            E +EIPEGV+V IN   + V+GP G+ SR F + N+D   +T+ E     + ++  F  +K  A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   + N D  + I NFLGE+  R  +++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY+  K
Sbjct:    9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV-NKD-VVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23
Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 551
            + IP GV V ++  ++ V+GP+G L R+  +  ++  +      G   ++       +  ++ + T  SH  N+ TGVTKGY Y M+ VY+HFPI   +    +++EI NFLGEK  R   +L G TV    KV  DE+ + G D E+V  +AA I +   ++++D R F DGIY+
Sbjct:    7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKVVG--ETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYI 170          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 64/187 (34.22%), Postives = 103/187 (55.08%), Query Frame = 3
Query:    3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            V  L  E +EIP  V V++N   + V+     L R      ++  +  +      ++ +++ F  +  +A + T  SH+QN+I GV++G+ YK+   YAHFP+  +      ++ I NFLGEK  R  ++++GVTV    KV  +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    3 VAALIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKG--NTVIIDNFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 64/187 (34.22%), Postives = 103/187 (55.08%), Query Frame = 3
Query:    3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            V  L  E +EIP  V V++N   + V+     L R      ++  +  +      ++ +++ F  +  +A + T  SH+QN+I GV++G+ YK+   YAHFP+  +      ++ I NFLGEK  R  ++++GVTV    KV  +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    3 VAALIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKG--NTVIIDNFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 9.926e-22
Identity = 64/178 (35.96%), Postives = 102/178 (57.30%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +EIPE V  + +   I VEG  G ++R   + ++D  +  DG+T    + I++   + KT + I T  SH++N+  GVT+G+ Y M   Y+HFP+  ++   +  + I NFLGEK  RR   + G T +  D   +EL + G DIE V ++AA I Q   + +KD+R F DG+Y++ K
Sbjct:    6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 63/181 (34.81%), Postives = 101/181 (55.80%), Query Frame = 3
Query:   18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            + T+EIPEGV V +   +    GP+G + R   +  +    M D + G+  + +DA +  ++  A + T  SH++NL+ GV +G+  KM  VYAHFP+   +    K++ I NFLGEKK R  +++    V  S    +++ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKVDG--KTLIIGNFLGEKKPRFAKIIGETKVKVSG---NDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 63/181 (34.81%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +E + IPE V V IN   + V+G  G++ RNF H  +           +  + +   F ++K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  R+ +++ G  V  S K +D + + G + E V ++ A I Q   +K +D R F DGIY+ +K
Sbjct:    8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKITI------SNDEENVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKVQG--KIVTIDNFLGERSPRKAKII-GDDVKVSVKGED-VTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METTH1.385e-2337.5050S ribosomal protein L6P OS=Methanobacterium ther... [more]
RL6_METMA1.385e-2336.4650S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_SULAC1.809e-2329.5150S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]
RL6_METS33.086e-2337.2250S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METHJ3.086e-2335.2350S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METVS2.612e-2234.2250S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA2.612e-2234.2250S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_HALMA9.926e-2235.9650S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_METAC1.296e-2134.8150S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_METST1.693e-2134.8150S ribosomal protein L6P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bp
CGGTGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATCAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTATTTTTTT
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