CF832596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23 Identity = 69/184 (37.50%), Postives = 105/184 (57.07%), Query Frame = 3 Query: 12 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 L E + IP+GV V I+ + V+GP+ +LSR F H + + D ++ ++ F +K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ +A DK + I NFLGE+ R + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY+ K Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVA-GDK-VVIENFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23 Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 3 Query: 18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 + T+EIPEGV V ++ + +GP+G + R F + + + +GE + +DA ++ A + T SH++NLI GV++G+ KM VYAHFP+ + K++ I NFLGEKK R ++L V S +E+++ G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVR-EGE-----VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKVEG--KTLVIGNFLGEKKPRIAKILGETKVKVSG---NEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.809e-23 Identity = 54/183 (29.51%), Postives = 109/183 (59.56%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569 E ++IP+ VKV + +++V+GP+G++ ++F + + +G ++ ++ F R+ A + + ++H++N+ITG GYRY ++ + HFPI+ ++ + +++ N +GEK +RR ++L GV V ++++++G+DI V+++AA I + D R F DGIY+ +K I Sbjct: 11 EEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23 Identity = 67/180 (37.22%), Postives = 103/180 (57.22%), Query Frame = 3 Query: 21 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 E +EIPEGV+V IN + V+GP G+ SR F + N+D +T+ E + ++ F +K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N D + I NFLGE+ R +++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY+ K Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV-NKD-VVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23 Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 551 + IP GV V ++ ++ V+GP+G L R+ + ++ + G ++ + ++ + T SH N+ TGVTKGY Y M+ VY+HFPI + +++EI NFLGEK R +L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY+ Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKVVG--ETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYI 170
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22 Identity = 64/187 (34.22%), Postives = 103/187 (55.08%), Query Frame = 3 Query: 3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 V L E +EIP V V++N + V+ L R ++ + + ++ +++ F + +A + T SH+QN+I GV++G+ YK+ YAHFP+ + ++ I NFLGEK R ++++GVTV KV +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 3 VAALIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKG--NTVIIDNFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22 Identity = 64/187 (34.22%), Postives = 103/187 (55.08%), Query Frame = 3 Query: 3 VTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 V L E +EIP V V++N + V+ L R ++ + + ++ +++ F + +A + T SH+QN+I GV++G+ YK+ YAHFP+ + ++ I NFLGEK R ++++GVTV KV +E+I+ G + E V ++AA I Q VK +D R F DGIY+ EK Sbjct: 3 VAALIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKG--NTVIIDNFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3) HSP 1 Score: 103.605 bits (257), Expect = 9.926e-22 Identity = 64/178 (35.96%), Postives = 102/178 (57.30%), Query Frame = 3 Query: 27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 +EIPE V + + I VEG G ++R + ++D + DG+T + I++ + KT + I T SH++N+ GVT+G+ Y M Y+HFP+ ++ + + I NFLGEK RR + G T + D +EL + G DIE V ++AA I Q + +KD+R F DG+Y++ K Sbjct: 6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21 Identity = 63/181 (34.81%), Postives = 101/181 (55.80%), Query Frame = 3 Query: 18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 + T+EIPEGV V + + GP+G + R + + M D + G+ + +DA + ++ A + T SH++NL+ GV +G+ KM VYAHFP+ + K++ I NFLGEKK R +++ V S +++ + G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKVDG--KTLIIGNFLGEKKPRFAKIIGETKVKVSG---NDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21 Identity = 63/181 (34.81%), Postives = 98/181 (54.14%), Query Frame = 3 Query: 18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560 +E + IPE V V IN + V+G G++ RNF H + + + + F ++K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+ R+ +++ G V S K +D + + G + E V ++ A I Q +K +D R F DGIY+ +K Sbjct: 8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKITI------SNDEENVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKVQG--KIVTIDNFLGERSPRKAKII-GDDVKVSVKGED-VTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178 The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bpback to top |