CF832596

Overview
NameCF832596
Unique NameCF832596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 63/187 (33.69%), Postives = 106/187 (56.68%), Query Frame = 3
Query:    3 VTILSSETMEIPEGVKVK-INAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            V  +  E +EIPE V ++ IN + + V+    +L R   + ++        +    ++ +++ +  +K +A I T  SH++N+ITGV++G+ YKM+  YAHFP+  S+      + I NFLGEK  R+  +++GV V  S    +++I+ G D E   ++AA I Q   V+ +D R F DGIY+ EK
Sbjct:    3 VAAIIREEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDVVI------KKEDNKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKG--NEVIIDNFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEK 178          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 64/184 (34.78%), Postives = 99/184 (53.80%), Query Frame = 3
Query:   12 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELI-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            ++   +EIPE V  +++   + VEGP G ++R   + ++   +  D +     ++ D      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+   +  IE  NFLGEK  RR  +     V    ++  E++ L G   E V ++AA I Q   V +KD R F DG+Y+++K
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSVDEDADADAVVIETDET--DAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRRTPIRGDTNV----QIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 59/178 (33.15%), Postives = 97/178 (54.49%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +EIP+ V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  RR ++     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y+ EK
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEG--EEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.433e-20
Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            + IPEGV V     ++   GP+G  +R   +  ++       E     + +D+    +K  A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +    K   I NFLGEKK R   +L   +V  S    DE+I+ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKVNG--KKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 557
            +EIP+ V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   D  I I NFLGEK  R+  +    +V   +   +EL + G  IE V ++AA I Q   V +KD R F DG+Y++E
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTPVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 59/189 (31.22%), Postives = 99/189 (52.38%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +     +E+PE V++ I         ++  GP+G+ +R  K+  +        E G  ++++      +K  A + T   H++NLITGV +G+ Y ++ VYAHFPI   +   +  IE  NF+GEK  RR +++    V  S +   ++ + G DIE   ++AA + Q   +K KD R F DGIY+ +K
Sbjct:   18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 62/179 (34.64%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   27 MEIPEGVKVKINAK-IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +EIPEG+ V  +   +    GP G + R   +  +  ++  DGE     +++DA    ++  A + T  SH++NL+ GV +G+  KM  +YAHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVR-DGE-----VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKVDG--KTLIIGNFLGEKKPRIAKILGETKVKVSG---NEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 54/181 (29.83%), Postives = 95/181 (52.49%), Query Frame = 3
Query:   33 IPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKK--VRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEK 560
            IPE VKV     I++V GP+G++ R F      +H +        ++ ++ +F +R+    I T  SH++N++ GV   + Y+++  Y HFP+   +      + + NFLGEK   ++ +  LD V V +  +K + E++++  D E     A++I Q      K KD R+F DGI++  K
Sbjct:   12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEG--NKLIVENFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYK 184          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.903e-18
Identity = 55/189 (29.10%), Postives = 107/189 (56.61%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAKI-----IEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            I+  E ++I + V+++I+ +      + V+GP+G++++ F +   D +L  + +     + I A   +R+  A +    ++++N+  GVT+G+ YK++ VY+HFP    +   +  + I NF+GE   R  E++D        + +D +I+ G D E V ++AA + Q  ++K++D R F DGIY+ EK
Sbjct:   17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYP--DVYLWVEDD----EVVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQD-IIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 56/182 (30.77%), Postives = 93/182 (51.10%), Query Frame = 3
Query:   18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563
            + +++IP+G KV I+   + +      +S+NF   N    L+ DG T    +KI+A   +      + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K++ I NF GE+  R  E++   TV       D + + G   + V  +AA I +   +K  D R F DGIY+  KG
Sbjct:    7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGDTTVTVKG---DRVYIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISKG 177          
The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_META33.772e-2133.6950S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_HALWD3.772e-2134.7850S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_HALSA4.926e-2133.1550S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_METBU1.433e-2034.2750S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_NATPD9.291e-2035.0350S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_ARCFU1.585e-1931.2250S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_METBF2.703e-1934.6450S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_NANEQ1.752e-1829.8350S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_METKA3.903e-1829.1050S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_THEAC2.142e-1630.7750S ribosomal protein L6P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bp
CGGTGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATCAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTATTTTTTT
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