CF832649

Overview
NameCF832649
Unique NameCF832649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.468e-39
Identity = 100/193 (51.81%), Postives = 125/193 (64.77%), Query Frame = -3
Query:  277 SMLKTLERYQKCNYGAPEPNVSARE-ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 822
            SM +TLERYQK +YG P+  +  +E  L  SS+ EYLKLKAR E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:   62 SMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.722e-35
Identity = 87/187 (46.52%), Postives = 120/187 (64.17%), Query Frame = -3
Query:  280 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 828
            +S M KTLERYQ+C+YG+ E +  ++E    SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E    +     P+ +         +  GD FF    L C   LQIGY  A  D ++  T+  +++ + QGW+
Sbjct:   60 TSCMNKTLERYQRCSYGSLETSQPSKETE--SSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE----SCASFRPNWD--------VRQPGDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.997e-33
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = -3
Query:  346 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 828
            SS M KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:   60 SSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.997e-33
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = -3
Query:  346 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 828
            SS M KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:   60 SSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.931e-28
Identity = 74/166 (44.58%), Postives = 99/166 (59.64%), Query Frame = -3
Query:  349 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 828
            SS M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:   60 SSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.931e-28
Identity = 74/166 (44.58%), Postives = 99/166 (59.64%), Query Frame = -3
Query:  349 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 828
            SS M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:   60 SSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.321e-27
Identity = 80/193 (41.45%), Postives = 113/193 (58.55%), Query Frame = -3
Query:  280 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVN--TLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 828
            S+ + KTLERYQ C Y A + N +  E    S   E  KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +L +EG   N   +Q    A+        A  Q      A++ EPTLQIGY     PA+  ++        + NN+M GW+
Sbjct:   59 SAGITKTLERYQHCCYNAQDSNNALSETQ--SWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.944e-27
Identity = 76/196 (38.78%), Postives = 109/196 (55.61%), Query Frame = -3
Query:  283 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--------CGYGLKPAQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 828
            S+ + KTLE+Y  C Y A   N +       S  QE  +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +L    + ++     + +D         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:   59 SAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEA--EADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 72/198 (36.36%), Postives = 112/198 (56.57%), Query Frame = -3
Query:  280 SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----------GYQVNTLQLNPSAEDCGYGLKPAQP--QGDTFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 825
            S M +T+++Y+K +Y   +PN SA++  +    Q+YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++L +          G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:   62 SGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 72/172 (41.86%), Postives = 100/172 (58.14%), Query Frame = -3
Query:  334 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG-------LKPAQPQGDTFFHALECEPTLQIGYQPADP 828
            SS+MLKTLERYQ+  Y + +      + ++ ++ QEY+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++L E          P   +C  G            PQ + FF AL     + +   PA P
Sbjct:   60 SSNMLKTLERYQRYIYASQDAAAPTSDEMQ-NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGLH-AVDVNQPPAPP 229          
The following BLAST results are available for this feature:
BLAST of CF832649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
MADS8_ORYSJ7.468e-3951.81MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA1.722e-3546.52MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ7.997e-3349.07MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI7.997e-3349.07MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS1_ORYSJ5.931e-2844.58MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI5.931e-2844.58MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS6_ORYSJ1.321e-2741.45MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ2.944e-2738.78MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL3_ARATH3.254e-2636.36Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD34_ORYSJ2.109e-2541.86MADS-box transcription factor 34 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02D08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832649 ID=CF832649; Name=CF832649; organism=Citrus sinensis; type=EST; length=830bp
CCCTCTTTTTTTTTTGCGCTATTAACATTATTCTCAAACAGGCTTTGTTA
ACCAAAGATAAGCGCGGTGATTGAAAATACACGCACACACAACATAGCTA
TATATCGTCATCAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTAT
AATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTAC
AAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTGCAATACATTGAC
TGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATT
ATTCAGACTCGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGT
ATCCAATTTGCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGGTATCG
CCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGG
ATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAACCTTTGTTTGA
GGGTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTA
AGGGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGA
CATATCAAGCTGCCTTTCAAGTGACTCAAGCTCTTTGCTGTTTAGAGGGC
CAAGTTCTTCTCCAAGGAGATTCCTTTGGGATCTCTGTAGGGCTTCATAT
CGTGCTTTAAGCTTCAGATATTCTTGCTGGCTACTTAGCTCCAGGGCCTC
CCTTGCGGACACATTCGGTTCTGGTGCTCCATAGTTGCACTTCTGGTACC
TCTCAAGCGTTTTGAGCATGCTTGAACTAC
back to top