CF832649

Overview
NameCF832649
Unique NameCF832649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 68/174 (39.08%), Postives = 99/174 (56.90%), Query Frame = -3
Query:  313 SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 825
            S M K LERY++ +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:   61 SCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 68/174 (39.08%), Postives = 99/174 (56.90%), Query Frame = -3
Query:  313 SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 825
            S M K LERY++ +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:   61 SCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.564e-20
Identity = 71/191 (37.17%), Postives = 104/191 (54.45%), Query Frame = -3
Query:  280 TLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVNTLQ---LNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLN--------NYMQGWL 810
            T+ERY +C Y     N    E  + S  QE  KLK++YE+L R+ RNLLGE+LG +  KEL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK LK +   EG+   T Q    N +A   G       P   +  + L+C  EP LQIG+Q      V   G S++        N++QGW+
Sbjct:   65 TIERYNRC-YNCSLSNNKPEETTQ-SWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQ--QHYYVQGEGSSVSKSNVAGETNFVQGWV 251          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.945e-20
Identity = 63/178 (35.39%), Postives = 102/178 (57.30%), Query Frame = -3
Query:  325 SSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD---TFFHALECEPTLQIG--YQPADPISV 825
            S M K LERY++ +Y      APE +V+   ++E      Y +LKA+ E L+R+QR+ LGE+L  ++SKEL++LE+QLD +LK IRS + Q M D++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P       +  + +  P L +G  YQ  DP+ +
Sbjct:   61 SCMEKILERYERYSYAERQLIAPESDVNTNWSME------YNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNHGHNMPPPPPPQQIQHPYMLSHQPSPFLNMGGLYQEEDPMEM 232          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 66/182 (36.26%), Postives = 99/182 (54.40%), Query Frame = -3
Query:  337 SSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL------KQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH------ALECEPTLQIG--YQPAD 825
            S M K LERY++ +Y      AP+ +V+A    + +   EY +LKA+ E L+R+QR+ LGEEL P++ K+L++LE+QL+ +LK IRS + Q M ++L  LQ KE+ + E N  L      ++ ++   Q    QLN S +D         PQ   F H      A +  P L +G  YQ  D
Sbjct:   61 SCMEKVLERYERYSYAERQLIAPDSHVNA----QTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDDV--------PQPQPFQHPHLYMIAHQTSPFLNMGGLYQEED 230          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.464e-18
Identity = 52/115 (45.22%), Postives = 78/115 (67.83%), Query Frame = -3
Query:  481 SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 825
            S M K LERY++ +Y A +  +SA    E +   EY KLKA+ E +Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L++ L+E
Sbjct:   61 SRMDKILERYERYSY-AEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVE 174          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 60/180 (33.33%), Postives = 102/180 (56.67%), Query Frame = -3
Query:  325 SSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD-----TFFHALECEPTLQIG--YQPADPISV 825
            S M K LERY++ +Y      APE +V+   ++E      Y +LKA+ E L+R+QR+ LGE+L  ++ KEL++LE+QLD +LK IR+ + Q M +++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P         +  + +  P L +G  YQ  DP+++
Sbjct:   61 SCMEKILERYERYSYAERQLIAPESDVNTNWSME------YNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQGHNMPPPLPPQQHQIQHPYMLSHQPSPFLNMGGLYQEDDPMAM 234          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  436 SSMLKTLERYQKCNY---GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 825
            SSM   LERYQ+ ++      EPN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:   61 SSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  436 SSMLKTLERYQKCNY---GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 825
            SSM   LERYQ+ ++      EPN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:   61 SSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 47/115 (40.87%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  481 SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 825
            S M + LERY++ ++ A +  V       +S   E+ KLKAR E LQR+Q++ +GE+L  L+ KEL++LE QLD +LK IRS + Q M ++++ LQ K++ L E N  L +++ E
Sbjct:   61 SCMERILERYERYSF-AEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKE 174          
The following BLAST results are available for this feature:
BLAST of CF832649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
MAD14_ORYSJ1.415e-2139.08MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI1.415e-2139.08MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL6_ARATH1.564e-2037.17Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AP1_SINAL5.945e-2035.39Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
CAL_ARATH8.584e-1936.26Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD15_ORYSJ1.464e-1845.22MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AP1_ARATH2.498e-1833.33Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD18_ORYSJ1.049e-1639.85MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI1.049e-1639.85MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL8_SOLLC1.515e-1540.87Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02D08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832649 ID=CF832649; Name=CF832649; organism=Citrus sinensis; type=EST; length=830bp
CCCTCTTTTTTTTTTGCGCTATTAACATTATTCTCAAACAGGCTTTGTTA
ACCAAAGATAAGCGCGGTGATTGAAAATACACGCACACACAACATAGCTA
TATATCGTCATCAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTAT
AATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTAC
AAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTGCAATACATTGAC
TGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATT
ATTCAGACTCGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGT
ATCCAATTTGCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGGTATCG
CCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGG
ATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAACCTTTGTTTGA
GGGTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTA
AGGGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGA
CATATCAAGCTGCCTTTCAAGTGACTCAAGCTCTTTGCTGTTTAGAGGGC
CAAGTTCTTCTCCAAGGAGATTCCTTTGGGATCTCTGTAGGGCTTCATAT
CGTGCTTTAAGCTTCAGATATTCTTGCTGGCTACTTAGCTCCAGGGCCTC
CCTTGCGGACACATTCGGTTCTGGTGCTCCATAGTTGCACTTCTGGTACC
TCTCAAGCGTTTTGAGCATGCTTGAACTAC
back to top