CF832649

Overview
NameCF832649
Unique NameCF832649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.376e-15
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = -3
Query:  403 SSMLKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQ 825
            S M K LERY +  Y   +    ++S  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N  L +++ E  + NT+        C       QPQ
Sbjct:   61 SCMEKILERYDRYLYSDKQLVGRDISQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKE-REKNTVHQEVQLIQCSNNSSILQPQ 199          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.409e-15
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = -3
Query:  481 SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 825
            S M + LERY++ ++ A    V        S   E+ KLKAR E LQR+Q++ +GE+L  LN KEL++LE QLD +LK IRS + Q M ++++ LQ +++ L E N  L +++ E
Sbjct:   61 SCMERLLERYERYSF-AERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKE 174          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -3
Query:  448 KTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL----MEGYQVNTLQLNP 813
            +T+ERY +C     + N+   + LE +   +QE  KLK +YE+L R+ RNL+GE+L  ++ KEL++LERQL+ +L   R  +TQ M++ + EL+ KE+ L + N  LK        +G+Q   L LNP
Sbjct:   64 RTIERYYRC-----KDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETEDHDFKGFQ--DLLLNP 184          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.822e-15
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = -3
Query:  481 SSMLKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 825
            S M + LERY +  Y   +    +VS  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QLD ++K IRS + Q M ++++ LQ K++ L + N +L +++ E
Sbjct:   61 SCMERILERYDRYLYSDKQLVGRDVSQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKE 174          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = -3
Query:  481 SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 825
            S M + LERY++ ++ A +  V        S   E  KLKAR E LQR+++  +GE+L  LN KEL++LE QL  +LK IRS + Q M ++++ LQ +++ L E N  L +++ E
Sbjct:   61 SCMERLLERYERYSF-AEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKE 174          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 52/177 (29.38%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  316 SSMLKTLERYQKCNYG----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPT---LQIGYQPADPISVVTA 825
            +S   T+ERY+K +      AP  +V++ +      QQE  K++ + + LQ + R+L+GE +G + +KEL+SLE +L+  + +IRS + + +   +  +Q +E  L   N  L+ ++ E  +        +AED      PA   G +    LE  P     +  YQPA P+S++ A
Sbjct:   61 NSTRSTIERYKKASASTSGSAPVIDVNSHQYF----QQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEH-DDQQAAEDDEMAPAPAVGGGSSSGTELEALPATFDTREYYQPAPPVSMLAA 232          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 43/128 (33.59%), Postives = 73/128 (57.03%), Query Frame = -3
Query:  445 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPS 828
            ++S+  T+ERY+K    A  P  S  EA     QQE  KL+ +   +Q S R+++GE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ ++ EG ++N  Q   S
Sbjct:   74 NNSVRGTIERYKKACSDAVNPP-SVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESS 200          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 44/141 (31.21%), Postives = 77/141 (54.61%), Query Frame = -3
Query:  409 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNT-LQLNPSAEDCGYGLKPAQ 828
            ++S+  T+ERY+K    +P  + S  EA     QQE  KL+    ++Q++ RN++GE LG L  ++L+ LE +L+  + +IRS + + +   +  +Q KE  L   N+ L+ ++ E  +    + L P + D  Y L P Q
Sbjct:   75 NNSVKGTIERYKKACTDSPNTS-SVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMPGSSD--YELAPPQ 212          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = -3
Query:  391 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN-TLQLNPSAEDCGYGLKPAQPQGDTF 828
            ++S+  T+ERY+K    A   N +     E+++Q   QE  KL+ +  ++Q S R L+GE +G ++ KEL +LE +LD S+ +IRS + + +   +  +Q +E  L   N+ L+ ++ E  + N ++ L P   +    + P Q Q   F
Sbjct:   75 NNSVKGTIERYKK----AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENERNNPSMSLMPGGSNYEQIMPPPQTQPQPF 220          
BLAST of CF832649 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 44/150 (29.33%), Postives = 81/150 (54.00%), Query Frame = -3
Query:  391 SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN-TLQLNPSAEDCGYGLKPAQPQGDTF 828
            ++S+  T+ERY+K    A   N +     E+++Q   QE  KL+ +  ++Q S R L+GE +G ++ KEL +LE +L+ S+ +IRS + + +   +  +Q +E  L   N+ L+ ++ E  + N ++ L P   +    + P Q Q   F
Sbjct:   75 NNSVKGTIERYKK----AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPF 220          
The following BLAST results are available for this feature:
BLAST of CF832649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AGL8_SINAL3.376e-1536.11Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_SOLTU4.409e-1540.87Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL13_ARATH7.520e-1539.06Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_ARATH9.822e-1539.83Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLCO5.389e-1339.13Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD21_ORYSJ2.048e-1229.38MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL1_ARATH2.675e-1233.59Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_PANGI1.734e-1131.21Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_BRANA3.862e-1130.00Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH3.862e-1129.33Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832649 ID=CF832649; Name=CF832649; organism=Citrus sinensis; type=EST; length=830bp
CCCTCTTTTTTTTTTGCGCTATTAACATTATTCTCAAACAGGCTTTGTTA
ACCAAAGATAAGCGCGGTGATTGAAAATACACGCACACACAACATAGCTA
TATATCGTCATCAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTAT
AATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTAC
AAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTGCAATACATTGAC
TGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATT
ATTCAGACTCGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGT
ATCCAATTTGCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGGTATCG
CCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGG
ATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAACCTTTGTTTGA
GGGTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTA
AGGGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGA
CATATCAAGCTGCCTTTCAAGTGACTCAAGCTCTTTGCTGTTTAGAGGGC
CAAGTTCTTCTCCAAGGAGATTCCTTTGGGATCTCTGTAGGGCTTCATAT
CGTGCTTTAAGCTTCAGATATTCTTGCTGGCTACTTAGCTCCAGGGCCTC
CCTTGCGGACACATTCGGTTCTGGTGCTCCATAGTTGCACTTCTGGTACC
TCTCAAGCGTTTTGAGCATGCTTGAACTAC
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