CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:7..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA Y VKLI P+GE N  +  DD YI+D AE+AG++LPYSCR GAC TCAG++ +GSVDQSD SFLDD Q+E G+VLTCVAYPTSDC I   KE +LY
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.411e-30
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA Y VKLI P+GE +  +  DD YI+D AE+AG++LPYSCR GAC TCAG++ +GSVDQSD SFLDD Q+E G+VLTCVAYPTSDC I   KE +LY
Sbjct:    1 MASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.411e-30
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI   G     D PDD YI+D AE+AG++LPYSCR GAC TCAG++V+G++DQSD SFLDD Q+E G+VLTCVAYPTSD  I   KE +LY
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDLY 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.407e-30
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L+ P+GE    D P+D YI+D AE+ G++LP+SCR GAC TCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I   +E ELY
Sbjct:    1 MATYKVTLVRPDGETT-IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEELY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI    G     + PDD YI+D AE+AG++LPYSCR GAC TCAG+++SG+VDQSD SFLDD Q+E G+VLTCVAYPTSDC I   KE ELY
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = -2
Query:  126 TSCLFQAAPRSKKFFLVKSPASLGSTRSVFKA-FGLKCFSFKA--SAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 548
            T+     A  S  F     P +     +V +A FGLK  + +   +AMA YKV L+ P G++ E + PDD YI+D AE+AG++LPYSCR G+C +CAG++ SGSV+Q DGSFLDD Q+++G+VLTCVAYPT D  I   KE EL
Sbjct:    4 TTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P G++ EFD PDD YI+D AE+ G++LPYSCR G+C +CAG++  G VDQSDGSFLDD+QME+G+VLTCVA+PTSD  I   KE EL
Sbjct:    1 ATYKVKLVTPQGQQ-EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 73/131 (55.73%), Postives = 94/131 (71.76%), Query Frame = -2
Query:  126 FLVKSPA--SLGSTRSVFKA-FGLKCFSF-KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 506
            F+ + PA  SL    +V +A FGLK  +  K + MA YKVKLI P+G   EFD PD+ YI+D AE+AG +LPYSCR G+C +CAG++  G+VDQ+DG+FLDD Q+E+G+VLTCVAYP SD  I   KE EL
Sbjct:   13 FMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 142          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 73/135 (54.07%), Postives = 95/135 (70.37%), Query Frame = -2
Query:  126 FLVKSPASLGSTRSVFKA-----FGLKCFSFKA---SAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 506
            F+ +SPA + S RS+  A     FGLK  + +    +AMA YKVK I P GE  E +  DD Y++D AE+AG++LPYSCR G+C +CAG++VSGSVDQSD SFLDD+Q+ +GFVLTC AYPTSD  I   KE ++
Sbjct:   15 FIRRSPAPI-SLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 67/126 (53.17%), Postives = 89/126 (70.63%), Query Frame = -2
Query:  135 KSPASLGS-----TRSVFKAFGLKCFSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 497
            ++P SL S     T+S+F          + +AMA YKVK I P GE+ E +  +D Y++D AE+AG++LPYSCR G+C +CAG++VSGS+DQSD SFLDD+QM +G+VLTCVAYPTSD  I   KE
Sbjct:   20 QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNY43.713e-3166.33Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY31.411e-3065.31Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER1_APHFL1.411e-3063.27Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_SYNLI2.407e-3063.27Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_MASLA3.143e-3064.65Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_MESCR3.143e-3049.31Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FERA_ALOMA4.105e-3064.58Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_CAPAN5.362e-3055.73Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER2_ARATH5.362e-3054.07Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_ARATH5.362e-3053.17Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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