CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 50/99 (50.51%), Postives = 66/99 (66.67%), Query Frame = -2
Query:  126 MAVYKVKLIGPNGEENEF-DAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSV-DQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 416
            MA YKV LI      N   +  DD  I+D  E+AG++LP SCR G+C TCAG++VSG+  +Q D +FLDD Q+  G+V+TCVAYPT DC I   +E E+
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.260e-19
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  126 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 407
            YKV L  P+G+   FD      +ID A +   +LP SC+ GAC TC G++VSG+VDQS+GSFLDD+Q+E+G+VLTC+A P SD  I   KE EL
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  135 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 416
            MA Y+V+LI    + +   +  ++  I+D AE+ G+ELP+SC  G+C +C G++V G VDQSD  FLDD+QM KGF L CV YP S+C I   +E
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  135 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 416
            MA Y+V+LI    + ++  +  +D  I++ A + G+ELP+SC  G+C +C G++V G VDQSD  FLDD+QM KGF L CV YP S+C I   +E
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  126 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 407
            YKV L  P+G+   FD      +ID   +   +LP SC+ GAC TC G++VSG+VDQS+GSFLDD+Q+E+G+VLTC+A P SD  I   KE EL
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.618e-18
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = -2
Query:  135 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 416
            MA Y+V+LI      +   +  ++  I+D AE+ G+ELP+SC  G+C +C G++V G VDQSD  FLDD+Q+ KGF L CV YP S+C I   +E
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = -2
Query:  135 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 416
            MA Y+V+LI      +      +D  +++ AE+A ++LP+SC  GAC +C G++V G ++Q D +FLD++Q+ KGFVL CV YP +DC I   +E
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQE 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = -2
Query:  135 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 416
            M  Y+V+LI      +      ++  I+D AE   +ELP+SC+ G+C +C  ++V G VDQS+  FLD++QM KGF++ CV+YP SDC I   +E
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQE 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA Y+V++I   G+   F A  D  ++D A+ AG++LP SC  G C TCA +++SG VDQ D   +  +  ++G+ L CVAYP SD  I   KE ELY
Sbjct:    1 MATYQVEVIY-QGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELY 97          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA3.851e-2050.51Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE3.260e-1953.19Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FERH_ANASP5.561e-1947.37Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI7.263e-1946.32Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FER2_EQUAR9.486e-1952.13Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_ANAVT1.618e-1846.32Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO2.337e-1742.11Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERV_ANAVT3.374e-1642.11Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP69.817e-1643.88Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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