CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G+  EF+ PDD YI+D AE+ G++LPYSCR G+C +CAG++ +G+VDQSDGSFLDD Q+ +G+VLTCVAYPTSD  I   KE EL
Sbjct:    1 ATYKVKLVTPSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.037e-29
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKVKL G  G +   D PDD YI+D AE+ G++LPYSCR GAC TCAG++ +GSVDQSD SFLDD Q+  GFVLTCVAYPTSDC I   +E  LY
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGLY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI P+GE + +DAPDD YI+D A DAG +LP SCR GAC TCAG++VSG+VDQS+ SFLDD Q+E G+VLTC+AYP SD  I   KE ELY
Sbjct:    1 MATYKVTLITPDGEVS-YDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEELY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.539e-29
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = -2
Query:  123 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 413
            A YKV L  P+G++   + PDD YI+D AE+AG++LPYSCR GAC +CAG++ +G+VDQSD SFLDD QM+ GFVLTCVAYPTSDC I   KE +L+
Sbjct:    1 ATYKVTLKTPSGDQT-IECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDLF 96          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.928e-29
Identity = 72/146 (49.32%), Postives = 92/146 (63.01%), Query Frame = -2
Query:  126 TVRLPTSCLFQAAPRSKKFFLVKSPASLGSTRSVFKAFGLKCFSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 563
            ++R P S L   AP + +  L  +  SL + + V  A        +  A A YKVKL+ P GE  E + PDD YI+D AE+ G++LPYSCR G+C +CAG++VSG +DQSD SFLDD QME G+VLTC AYP SD  I   KE EL
Sbjct:    6 SLRAPFS-LRAVAPPAPRVALAPAALSLAAAKQVRGA--------RLRAQATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.928e-29
Identity = 63/99 (63.64%), Postives = 73/99 (73.74%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI    G     +  DD YI+D AE+AG++LPYSCR GAC TCAG++ SG+VDQSD SFLDD Q+E G+VLTCVAYPTSDC I   KE ELY
Sbjct:    1 MATYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEELY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 70/149 (46.98%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  126 MSTVRLPTSCLFQAAPRSKKFFLVKSPASLGSTRSVFKAFGLKCFSF-KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 569
            +ST+ +  S L    P+ +       P ++G        FGLK  S  + +AMA YKV LI        FD PDD Y++D AE+ G++LPYSCR G+C +CAG++V+GSVDQSD SFLDD Q+E G+VLTC AYP++D  I   KE EL
Sbjct:    5 LSTLSVSASLL----PKQQPMVASSLPTNMGQA-----LFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCR G+C +CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.011e-28
Identity = 63/99 (63.64%), Postives = 73/99 (73.74%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENE-FDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI      NE  D  DD YI+D AE+AG++LPYSCR GAC TCAG++ SGS+DQSD SFLDD Q+E G+VLTCVAYPTSDC I   +E  LY
Sbjct:    1 MATYKVTLISEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.011e-28
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKLI P+G + EF+ PDD YI++ AE+ G+++PYSCR G+C +CAG++V+GSVDQSD SFLDD+Q+E+G+VLTCVAYP SD  I   KE EL
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FERB_ALOMA1.194e-2962.50Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_GUITH2.037e-2964.29Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER1_SYNP22.661e-2965.31Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER_SCEQU4.539e-2961.86Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_WHEAT5.928e-2949.32Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_CHLFR5.928e-2963.64Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_SILPR7.742e-2946.98Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_DATAR7.742e-2964.58Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_SPIMA1.011e-2863.64Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_SAMNI1.011e-2862.50Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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