CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:7..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.011e-28
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA +KV LI    G  N  D PDD YI+D AE+ G +LP+SCR GAC TCAG++VSG+VDQSD SFLDD Q+E G+VLTCVAYPTSD  I   KE +LY
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.321e-28
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCR G+C +CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKLI P+G   EFD PDD YI+D AE+AG +LPYSCR G+C +CAG++  G+VDQ+DG+FLDD Q+E+G+VLTCVAYP SD  I   KE EL
Sbjct:    1 ASYKVKLITPDGPI-EFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = -2
Query:  126 SFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 434
            S +  A A Y VKLI P GE  E   PDD YI+D+AE+ G++LPYSCR G+C +CAG++VSGS+DQSD SFLDD Q+  G+VLTCVAYPTSD  I   KE +L
Sbjct:   32 SSRLRAQATYNVKLITPEGEV-ELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCR G+C +CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I   KE +L
Sbjct:    1 ATYKVKLVTPDGPI-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCR G+C +CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA +KV LI    G ++E + PDD YI+D AE+ G +LP+SCR GAC TCAG++VSG+VDQSD SFLDD Q+E G+VLTCVAYPTSD  I   KE +LY
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G +LPYSCR G+C +CAG++ +G+VDQSDG++LDD QM +GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G +LPYSCR G+C +CAG++ +G+VDQSDG++LDD QM +GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 72/131 (54.96%), Postives = 90/131 (68.70%), Query Frame = -2
Query:  126 FLVKSPA--SLGSTRSVFKA-FGLKCF-SFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 506
            FL + PA  SL +  +V +A FGLK   + + + MA YKVKLI P G   EF+ PDD YI+D AE+ G +LPYSCR G+C +CAG++ +GSVDQSDG+FLD+ Q   GFVLTCVAYP  D  I   KE EL
Sbjct:   13 FLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_ANAVT1.011e-2862.63Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_ATRBE1.321e-2864.58Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER_CAPAA1.725e-2863.54Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER5_MAIZE1.725e-2860.19Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER_SOLNI2.253e-2863.54Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_SCOJA2.253e-2864.58Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_NOSMU2.253e-2861.62Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER_DATME2.253e-2862.50Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN2.253e-2862.50Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER1_SOLLC2.253e-2854.96Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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