CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA +KV LI    G ++E + PDD YI+D AE+ G +LP+SCR GAC TCAG++VSG+VDQSD SFLDD Q+E G+VLTCVAYPTSD  I   KE +LY
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA +KV LI    G ++E + PDD YI+D AE+ G +LP+SCR GAC TCAG++VSG+VDQSD SFLDD Q+E G+VLTCVAYPTSD  I   KE +LY
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.942e-28
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKLI P G   EFD PDD YI+D AE+ G +LPYSCR G+C +CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ASYKVKLITPEGAV-EFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.942e-28
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = -2
Query:  135 STRSVFKAFGLKCFSF-KASAMAVYKVKLI-GPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 476
            S+ SV KAFGLK  S  + + MA YKV  + G  G EN  +  D+ Y +D AE AGM+LPYSCR GAC +CAG + +G VDQSD SFLDD Q++ GFVLTCVAYP SDC I   +E
Sbjct:   27 SSVSVAKAFGLKSRSMGRLTCMATYKVTFLDGETGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQE 142          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.942e-28
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCR G+C +CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I   KE +L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.842e-28
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P GE  E + PDD YI+D AE+ G++LPYSCR G+C +CAG++VSG +DQSD SFLDD QME+G+VLTC AYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.018e-28
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENE-FDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI      NE  D  DD YI+D AE+AG++LPYSCR GAC TCAG + SG++DQSD SFLDD Q+E G+VLTCVAYPTSDC I   +E  LY
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.018e-28
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = -2
Query:  123 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 407
            YKV L  P+GEE   + P+D YI+D AE+AG++LPYSCR GAC +CAG++ SG VDQSD SFLDD QM KGFVLTCVAYPTSD  I   +E  LY
Sbjct:    1 YKVTLKTPSGEET-IECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY 94          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.554e-28
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = -2
Query:  123 MAVYKVKLIGPN-GEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YK+ L+  + G +  FD  +D YI+D AE+AG+ELPYSCR GAC TCAG++  GSVDQSD SFLDD+Q+ KG+VLTC+AYP SDC I    E ELY
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQELY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.554e-28
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G++ EF  PDD YI+D AE+ G++LPYSCR G+C +CAG++  G VDQSDGSFLDD+Q+ +G+VLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_ANASP2.253e-2861.62Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO2.253e-2861.62Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_TOBAC2.942e-2864.58Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_PHYPA2.942e-2856.90Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER2_HYONI2.942e-2863.54Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_HORVU3.842e-2862.50Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_SPIPL5.018e-2862.63Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_CHLFU5.018e-2864.21Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_PORPU6.554e-2860.61Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_COLES6.554e-2861.46Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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