CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:7..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 6.554e-28
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = -2
Query:  123 MAVYKVKLI-GPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MAVYKV+LI    G +   + PDD YI+D AE+ G++LPYSCR GAC TCAG++V G+VDQSD SFLDD Q+  G+VLTCVAYP+SDC +   +E  LY
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.560e-28
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G +LPYSCR G+C +CAG++ +GSVDQSDG+FLDD Q+  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.560e-28
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVK I P GE+ E +  DD Y++D AE+AG++LPYSCR G+C +CAG++VSG VDQSD SFLDD Q+ +GFVLTC AYPTSD  I   KE EL
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 8.560e-28
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = -2
Query:  123 MAVYKVKLIGPN-GEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            M  YKVKL     G + E + P+D YI+D AE+ G++LPYSCR GAC TCAG+++SG+VDQSD SFLDD+Q+++GFVLTCVAYPTS+C I   +E  LY
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEALY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.460e-27
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G +LPYSCR G+C +CAG++ +G+VDQSDG++LDD QM  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.460e-27
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G +LPYSCR G+C +CAG++ +G+VDQSDG++LDD QM  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.460e-27
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKV LI P G++ EF+ PDD YI+D A +   +LPYSCR G+C +CAG++ +GSVDQSDGS+LDD QME G+VLTCVAYPTSD  I   KE EL
Sbjct:    1 ATYKVTLITPEGKQ-EFEVPDDVYILDHAAEEVGDLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.460e-27
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVK I P GE+ E +  DD Y++D AE+AG++LPYSCR G+C +CAG++VSGSVDQSD SFLDD Q+ +GFVLTC AYPTSD  I   +E ++
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENE-FDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI      NE  + PDD YI+D AE+ G++LPYSCR GAC TCAG++  G +DQSD SFLDD Q+E G+VLTCVAYP SDC I   +E ELY
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEELY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  135 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 413
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCR G+C +CAG++ +G+VDQSDG+FLDD Q+  GFVLTCVAYP SD  I   KE
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKE 92          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_CYAPA6.554e-2859.60Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_SOLAB8.560e-2862.50Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_BRANA8.560e-2862.50Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER1_CYACA8.560e-2859.60Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_DATST1.460e-2761.46Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU1.460e-2761.46Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER_ARCLA1.460e-2762.50Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER3_RAPSA1.460e-2760.42Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_SYNP41.907e-2760.61Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER_LYCCN1.907e-2763.44Ferredoxin OS=Lycium chinense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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