CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = -2
Query:  123 KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 428
            + S MA YKV L  P+G++   + P D YI+D AE+AG++LPYSCR GAC +CAG++ +G+VDQSD SFLDD QM  GFVLTCVAYPTSDC I   +E  LY
Sbjct:   27 RMSCMA-YKVTLKTPSGDKT-IECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEALY 126          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 61/99 (61.62%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L+    G     D  DD YI+D AE+ G++LPYSCR GAC TCAG++VSG+VDQSD SFLDD Q+  GFVLTCVAYPTSD  I   KE +LY
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 61/99 (61.62%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  123 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L+    G     D  DD YI+D AE+ G++LPYSCR GAC TCAG++VSG+VDQSD SFLDD Q+  GFVLTCVAYPTSD  I   KE +LY
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G ELPYSCR G+C +CAG++ +G+VDQSDG+FLDD Q+  GFVLTCVAYP SD  I   KE +L
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.548e-27
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = -2
Query:  126 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 407
            +KVKL+ P+G + EF+ PDD YI+D AE+ G+ELPYSCR G+C +CAG++V G +DQSD SFLDD+Q+E+G+VLTC AYP SD  I   KE EL
Sbjct:    2 FKVKLLTPDGPK-EFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEEL 94          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.246e-27
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKL+ P G + EF+ PDD YI+D AE+ G+ LPYSCR G+C +CAG++ +G V+QSDGSFLDD Q+E+G+VLTCVAY  SD  I   KE EL
Sbjct:    1 ASYKVKLVTPEGTQ-EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKLI P G   EF+ PDD YI+D AE+ G +LPYSCR GAC +CAG++ +G+VDQSD SFLDD Q+ +GFVLTCVAYP S+  I   KE +L
Sbjct:    1 ATYKVKLITPEGPV-EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  123 AVYKVKLIGPN-GEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 413
            A YK+ L+    G +  FD  +D YI+D AE+ G+ELPYSCR GAC TCAG++  G+VDQSD SFLDD+QM KG+VLTC+AYP SDC I    E ELY
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQELY 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKVKLI P+G    FD PD+ YI+D AE+ G +LPYSCR G+C +CAG++ +G+VDQSDG+FLDD Q+  GFVLTCVAYP SD  I   KE EL
Sbjct:    1 ATYKVKLITPDGPV-VFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = -2
Query:  126 KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 428
            K  A    KVKLI P GEE E +  +D  I++ AE+AG+ELPYSCR G C TC G++VSG VDQS GSFL+++Q++KG++LTC+A P  DC +Y  K+ +L
Sbjct:   47 KVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_CHLRE1.907e-2759.80Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_SYNP61.907e-2761.62Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE71.907e-2761.62Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_HYONI3.253e-2761.46Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_LEUGL5.548e-2760.64Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_MEDSA7.246e-2760.42Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_SOLLY9.464e-2761.46Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_PORUM9.464e-2759.18Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_PHYAF9.464e-2761.46Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER4_ARATH9.464e-2753.47Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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