CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:7..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  126 AMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 419
            A A Y VKLI P GE  E   PDD YI+D AE+ G++LPYSCR G+C +CAG++VSGSVDQSD S+LDD Q+  G+VLTC AYPTSD  I   KE EL
Sbjct:   51 AQATYNVKLITPEGEV-ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 147          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.236e-26
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = -2
Query:  123 MAVYKVKLIGPN-GEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            M  +KV LI    G     + PDD YI+D AE+ G++LPYSCR GAC TCAG++ +G+VDQSD SFLDD Q++ G+VLTCVAYPTSDC I   +E +LY
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDLY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.614e-26
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKV L+ P+G +   +  DD YI+D AE+ GM+LPYSCR GAC +CAG++ SGSVDQSD SFL+D QME+G+VLTC+AYPT D  I   KE EL
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.614e-26
Identity = 67/147 (45.58%), Postives = 85/147 (57.82%), Query Frame = -2
Query:  126 STVRLPTSCLFQAAPRSKKFFLVKSPASLGSTRSVFKAFGLKCFSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 566
            S VRLP S     AP   +  ++ +   LG                +    A Y VKLI P+GE  E   PDD YI+D AE+ G++LPYSCR G+C +CAG++VSG +DQSD SFLDD Q+  G+VLTC AYP SD  I   KE +L
Sbjct:    8 SQVRLPMSLRVATAPAPARVSVLPASNKLGD---------------RLRMQATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.614e-26
Identity = 67/147 (45.58%), Postives = 85/147 (57.82%), Query Frame = -2
Query:  126 STVRLPTSCLFQAAPRSKKFFLVKSPASLGSTRSVFKAFGLKCFSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 566
            S VRLP S     AP   +  ++ +   LG                +    A Y VKLI P+GE  E   PDD YI+D AE+ G++LPYSCR G+C +CAG++VSG +DQSD SFLDD Q+  G+VLTC AYP SD  I   KE +L
Sbjct:    8 SQVRLPMSLRVATAPAPARVSVLPASNKLGD---------------RLRMQATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  135 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 413
            A YKVKLI P+G   EF+ PDD YI+D AE+ G +LPYSCR GAC +CAG++V GSVDQSD SFLDD Q+  GFVLTCVAYP S+  I   KE
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKE 92          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L  P+G+ N    PDD YI+D AE+ G++LPYSCR GAC TCAG++VSG     D SFLDD Q++ G++LTCVAYPT DC I   KE  LY
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = -2
Query:  123 VYKVKLIGPN-GEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 410
            +YK++L+    G +   + P D YI+D AE+ G++LPYSCR GAC TCAG++V GSVDQSD SFLD++Q+  GF+LTCVAYPTSDC I   +E  LY
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEALY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENE-FDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV LI    + N   D  DD +++D AE+AG++LPYSCR GAC TCAG++  G++DQS+ +FLDD QM  GFVLTC+AYP SDC I   +E ELY
Sbjct:    1 MATYKVTLISEEHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDELY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKV L+ P+G +   D PDD Y++D AE+AG++LPYSCR G+C +CAG++ +G+VDQ D SFLDD Q+E GFVLTCVAYP  D  I   KE ++
Sbjct:    1 ATYKVTLVTPSGTQT-IDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDI 95          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_MAIZE9.464e-2762.24Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER1_PLEBO1.236e-2657.58Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER2_SPIOL1.614e-2660.42Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER1_ORYSJ1.614e-2645.58Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI1.614e-2645.58Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_SOLLS2.108e-2664.52Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_APHSA2.108e-2658.16Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_CYACA2.754e-2656.70Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_THAWE3.596e-2656.57Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER1_PHYES3.596e-2656.25Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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