CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:7..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.697e-26
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = -2
Query:  123 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 413
            A Y VKLI P+GE    +  +D YI+D AEDAG++LPYSCR GAC +C G +  G+VDQSD SFLDD QM KGF LTC  YPTS+C I   KE +L+
Sbjct:    1 ATYSVKLINPDGEVT-IECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDLF 96          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = -2
Query:  126 FGLKCFSFKAS-AMAVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 452
            FGLK  S      MA YKV L+ P G   EF  PDD YI+D AE+ G++LPYSCR G+C +CAG++ +GS++Q D SFLDD Q+++G+VLTC AYP SD  I   KE EL
Sbjct:   37 FGLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.046e-25
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  123 AVYKVKLIGPN-GEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 413
            A YK+ L+  + G +   + PDD YI+D AE+ G++LPYSCR GAC TCAG+++ G VDQSD SFLDD Q++ GFVLTCVAYPTS+  I   +E  LY
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESLY 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.046e-25
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKV  + P+G +     P D Y++D AED G++LPYSCR GAC +CAG++ +GSV+Q DGSFLD++QME G+VLTCVAYPTSD  I   KE +L
Sbjct:    2 ASYKVTFVTPSGTKT-ITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = -2
Query:  123 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 407
            Y V L  P+GE+    +PD +YI+D AE+AG++LPYSCR G+C +CAG++ SG+VDQSD SFLDD QM+ GFVLTCVAY TSDC I   +E  LY
Sbjct:    2 YMVTLKTPSGEQKVEVSPD-SYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENLY 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.331e-25
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = -2
Query:  123 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 407
            YKV L  P+G++   +   DAYI+D AE+AG++LPYSCR GAC +CAG++ +G++DQSD SFLDD Q  +GFVLTCVAY TSDC I   +E  LY
Sbjct:    2 YKVTLKTPSGDQT-IEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESLY 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.045e-25
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  126 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 407
            YKVKL+ P GE+ EF+ PDD YI+D AE+ G++LPYSCR G+C +CAG++VSG VD SD SFL+D  M+ G+VLTC AY  SD  I   KE E+
Sbjct:    4 YKVKLLTPEGEK-EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.045e-25
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKV L+ P+G +   D PDD Y++D AE+AG++LPYSCR G+C +C G++ +G+VDQ D SFLDD Q+E GFVLTCVA+P  D  I   KE ++
Sbjct:    1 ATYKVTLVTPSGTQT-IDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  123 YKVKLIGPNGEENE-FDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 407
            Y V L+      N     PDD +I+D AE+ G+ELPYSCR GAC TCAG+++SG++DQS+ SFLDD QM  GF+LTCVAYPTSDC +    E +LY
Sbjct:    3 YSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDLY 98          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKV L   +G E   D  +D++I+D AE+ G+++P+SCR G+C TCAG++  G+VDQS+ +FLDD QME+G+VLTCVAYPTSDC I   +E E+
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEM 96          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_EUGVI4.697e-2658.76Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER1_SPIOL6.135e-2654.55Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER3_CYACA1.046e-2556.12Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER2_PHYES1.046e-2557.29Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_DUNSA1.367e-2560.00Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER2_DUNSA2.331e-2557.89Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER_PANGI3.045e-2558.51Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER1_PHYAM3.045e-2554.17Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_BUMFI5.193e-2556.25Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER_BRYMA5.193e-2554.17Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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