CF832837

Overview
NameCF832837
Unique NameCF832837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:7..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A YKV  + P+G  N    P D Y++D AE++G++LPYSCR GAC +CAG++ +G+V+Q DGSFL+++QME G+VLTCVAYPTSD  I   KE +L
Sbjct:    2 ASYKVTFVTPSGT-NTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.782e-25
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  123 MAVYKVKLI-GPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YK+ L+    G +  F+  +D YI+D AE+ G+ELPYSCR GAC TCAG++  G+VDQ+D SFLDD Q+  G+VLTC+AYP+SDC I    E ELY
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQELY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.782e-25
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = -2
Query:  123 MAVYKVKLIGPNGEENEFDAP----DDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 416
            MA YKV L+    EE++ DA     DD +++D AE+ G+ELPYSCR GAC TCAG++  G +DQS+ +FLDD Q+  GFVLTC+AYP SDC +   +E ELY
Sbjct:    1 MATYKVTLLS---EEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDELY 99          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = -2
Query:  126 AVYKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 413
            A++KVK + P+GE    + PDD +I+D  E+AG++LPYSCR GAC +C G+++ G VDQS+ SFLDD QM +GFVLTCVAYP  D  I    E +L
Sbjct:    1 AIFKVKFLTPDGERT-IEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.577e-24
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = -2
Query:  150 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGI 407
            +KV L  P G+ +  D  DD YI+D AE+AG+ LPYSCR GAC +CAG++ +G VDQSD SFLDD QM++G+VLTC+AYPTSD  I
Sbjct:    2 FKVTLNTPTGQ-SVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTI 86          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.366e-24
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  123 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 407
            YK  L  P+GE    D P+   I+D AE+AG +LP+SCR GAC +C G++VSGSVDQS+GSFLDD QME+GFVLTC+A P SD  I   KE EL+
Sbjct:    2 YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.396e-24
Identity = 55/95 (57.89%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  123 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 407
            Y V L  P G E E +  +  Y++D AED G++LPYSCR GAC TCAG +  G+VDQSD SFLDD Q+   FVLTCVAYPTSDC I   +E +LY
Sbjct:    4 YTVTLSTPGGVE-EIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKLY 97          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.499e-24
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  123 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFELY 407
            YK  L  P+GE    D P+   I+D AE+AG +LP+SCR GAC +C G++VSGSVD+S+GSFLDD QME+GFVLTC+A P SD  I   KE EL+
Sbjct:    2 YKTVLKTPSGEFT-LDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.348e-23
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = -2
Query:  135 MAVYKVKLIGP-NGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKE 416
            MA YKV+L     G +   + PDD YI+D AE+AG++LP+SCR G+C +C G +  G+VDQSD +FLDD Q+  G VLTCVAYPTS+C I   +E
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHRE 95          
BLAST of CF832837 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.291e-23
Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  126 YKVKLIGPNGEENEFDAPDDAYIIDFAEDAGMELPYSCRGGACFTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCGIYPPKEFEL 407
            +KV L  P+G+++ F+ P D+YI+D AE+ G+ELPYSCR G+C +CAG++++GS+DQSD +FLDD Q   G+ LTCV YPTSD  I    E EL
Sbjct:    1 FKVTLDTPDGKKS-FECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
The following BLAST results are available for this feature:
BLAST of CF832837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_PHYAM5.193e-2555.21Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER_PORYE6.782e-2555.56Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_ODOSI6.782e-2553.92Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_GLEJA1.511e-2454.17Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER_MARPO2.577e-2460.47Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER1_EQUTE3.366e-2458.95Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_RHOPL4.396e-2457.89Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER1_EQUAR7.499e-2457.89Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER2_NOSMU6.348e-2353.68Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_PERBI8.291e-2354.26Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832837 ID=CF832837; Name=CF832837; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTGAAGCCAAAGACCAACATAAGCAAATATCAACA
GGTTTCTTCCACCGTTCTAGCACAAATGCGGATCCCAGAAAGCAAATGCC
AAGCTCGTAACATTATTATTCAGTAAAGTTCAAATTCCTTGGGGGGGTAA
ATCCCACAATCTGATGTAGGATATGCAACGCATGTAAGCACGAAACCTTT
CTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTGGTCAACGGAGC
CTGAAACCATCTGCCCAGCACAAGTAAAGCAGGCACCACCCCGACATGAG
TAGGGGAGCTCCATTCCGGCATCTTCGGCAAAGTCTATGATGTAAGCATC
ATCGGGGGCATCAAACTCATTCTCCTCTCCGTTTGGGCCAATCAGTTTCA
CTTTGTAAACGGCCATTGCAGATGCTTTGAATGAAAAACACTTCAGTCCA
AATGCTTTAAAAACACTCCTGGTCGAACCCAGGGAAGCCGGGCTCTTGAC
CAAAAAAAATTTTTTGCTTCGGGGAGCAGCCTGGAATAAGCAAGATGTGG
GAAGTCTCACAGTTGACATGTTTATACCTTTTAACCCAGGAGGTTGTTCG
GTTGTACCAATGACAGTGTAATAATGAAACCGACGCTTGGCCGCCCCA
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