CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:6..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  240 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            VYKV L+   G E   D PDD YI+D AED G++LPYSCRAGACSTCAG++VSG+VDQSD SFLDD Q+EKG+VLTCVAYPTSD  I THKE +LY
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDLY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.161e-34
Identity = 67/96 (69.79%), Postives = 82/96 (85.42%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P G++ EFD PDD YI+D AE+ G++LPYSCRAG+CS+CAG++  G VDQSDGSFLDD+QME+G+VLTCVA+PTSD VI THKE EL
Sbjct:    1 ATYKVKLVTPQGQQ-EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA Y VKLI P+GE +  +  DD YI+D+AE+AG++LPYSCRAGACSTCAG++ +GSVDQSD SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct:    1 MASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV LI   G     D PDD YI+D+AE+AG++LPYSCRAGACSTCAG++V+G++DQSD SFLDD Q+E G+VLTCVAYPTSD  I THKE +LY
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDLY 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.379e-34
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCRAGACSTCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I T++E ELY
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.379e-34
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCRAGACSTCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I T++E ELY
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.379e-34
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L+ P+G E   D P+D YI+D AE+ G++LP+SCRAGACSTCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I T++E ELY
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.379e-34
Identity = 65/96 (67.71%), Postives = 82/96 (85.42%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G+  EF+ PDD YI+D AE+ G++LPYSCRAG+CS+CAG++ +G+VDQSDGSFLDD Q+ +G+VLTCVAYPTSD VI THKE EL
Sbjct:    1 ATYKVKLVTPSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.413e-34
Identity = 77/146 (52.74%), Postives = 98/146 (67.12%), Query Frame = 3
Query:   87 TVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            ++R P S L   AP + + +L  +  SL + + V  A        +  A A YKVKL+ P GE  E + PDD YI+D AE+ G++LPYSCRAG+CS+CAG++VSG +DQSD SFLDD QME G+VLTC AYP SD VI THKE EL
Sbjct:    6 SLRAPFS-LRAVAPPAPRVALAPAALSLAAAKQVRGA--------RLRAQATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.413e-34
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 3
Query:  153 KSPASLGSTRSVSKA-----FGLKCSSFKA---SAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            +SPA + S RS+  A     FGLK  + +    +AMA YKVK I P GE  E +  DD Y++D+AE+AG++LPYSCRAG+CS+CAG++VSGSVDQSD SFLDD+Q+ +GFVLTC AYPTSD  I THKE ++
Sbjct:   18 RSPAPI-SLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_NOSMU8.892e-3570.83Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FERA_ALOMA1.161e-3469.79Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_SYNY31.517e-3469.39Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER1_APHFL1.517e-3467.35Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_THEVL3.379e-3466.33Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB3.379e-3466.33Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN3.379e-3466.33Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FERB_ALOMA3.379e-3467.71Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_WHEAT4.413e-3452.74Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER2_ARATH4.413e-3457.58Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
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