CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:6..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.858e-24
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEF-DAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSV-DQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            MA YKV LI      N   +  DD  I+D+ E+AG++LP SCRAG+CSTCAG++VSG+  +Q D +FLDD Q+  G+V+TCVAYPT DC I TH+ESE+
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            YKV L  P+G+   FD      +ID A +   +LP SC+AGACSTC G++VSG+VDQS+GSFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            YKV L  P+G+   FD      +ID   +   +LP SC+AGACSTC G++VSG+VDQS+GSFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            MA Y+V+LI    + +   +  ++  I+D AE+ G+ELP+SC +G+CS+C G++V G VDQSD  FLDD+QM KGF L CV YP S+C I TH+E  L
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            MA Y+V+LI    + ++  +  +D  I++ A + G+ELP+SC +G+CS+C G++V G VDQSD  FLDD+QM KGF L CV YP S+C I TH+E  L
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            MA Y+V+LI      +   +  ++  I+D AE+ G+ELP+SC +G+CS+C G++V G VDQSD  FLDD+Q+ KGF L CV YP S+C I TH+E  L
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 44/98 (44.90%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            MA Y+V+LI      +      +D  ++++AE+A ++LP+SC +GACS+C G++V G ++Q D +FLD++Q+ KGFVL CV YP +DC I TH+E+ L
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            M  Y+V+LI      +      ++  I+D+AE   +ELP+SC++G+CS+C  ++V G VDQS+  FLD++QM KGF++ CV+YP SDC I TH+E  L
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA Y+V++I   G+   F A  D  ++DSA+ AG++LP SC  G C+TCA +++SG VDQ D   +  +  ++G+ L CVAYP SD  I THKE ELY
Sbjct:    1 MATYQVEVIY-QGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELY 97          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA1.858e-2455.56Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE3.505e-2358.51Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR1.020e-2257.45Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_ANASP2.272e-2250.00Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI2.967e-2248.98Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERH_ANAVT6.610e-2248.98Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO5.596e-2144.90Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERV_ANAVT1.378e-1944.90Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP63.070e-1946.94Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
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