CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.764e-34
Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = 3
Query:  198 FGLKCSSF-KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            FGLK ++  K + MA YKVKLI P+G   EFD PD+ YI+D AE+AG +LPYSCRAG+CS+CAG++  G+VDQ+DG+FLDD Q+E+G+VLTCVAYP SD  I THKE+EL
Sbjct:   34 FGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 142          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L+ P+GE    D P+D YI+D AE+ G++LP+SCRAGACSTCAG+++ G VDQSD SFLDD Q+EKGFVLTCVAYP SDC I TH+E ELY
Sbjct:    1 MATYKVTLVRPDGETT-IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEELY 97          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.190e-33
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKVKL G  G +   D PDD YI+D+AE+ G++LPYSCRAGACSTCAG++ +GSVDQSD SFLDD Q+  GFVLTCVAYPTSDC I TH+E  LY
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGLY 97          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  174 STRSVSKAFGLKCSSF-KASAMAVYKVKLI-GPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            S+ SV+KAFGLK  S  + + MA YKV  + G  G EN  +  D+ Y +D+AE AGM+LPYSCRAGACS+CAG + +G VDQSD SFLDD Q++ GFVLTCVAYP SDC+I TH+E  +
Sbjct:   27 SSVSVAKAFGLKSRSMGRLTCMATYKVTFLDGETGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 74/149 (49.66%), Postives = 97/149 (65.10%), Query Frame = 3
Query:   81 MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSF-KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            +ST+ +  S L    P+ +       P ++G        FGLK  S  + +AMA YKV LI        FD PDD Y++D AE+ G++LPYSCRAG+CS+CAG++V+GSVDQSD SFLDD Q+E G+VLTC AYP++D  I THKE EL
Sbjct:    5 LSTLSVSASLL----PKQQPMVASSLPTNMGQA-----LFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 64/97 (65.98%), Postives = 81/97 (83.51%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            A YKV L  P+G++   + PDD YI+D+AE+AG++LPYSCRAGACS+CAG++ +G+VDQSD SFLDD QM+ GFVLTCVAYPTSDC I THKE +L+
Sbjct:    1 ATYKVTLKTPSGDQT-IECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDLF 96          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD +I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 3
Query:  234 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQSD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  234 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV LI    G     +  DD YI+D+AE+AG++LPYSCRAGACSTCAG++ SG+VDQSD SFLDD Q+E G+VLTCVAYPTSDC I THKE ELY
Sbjct:    1 MATYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEELY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 3
Query:  234 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA +KV LI    G ++E + PDD YI+D+AE+ G +LP+SCRAGACSTCAG++VSG+VDQSD SFLDD Q+E G+VLTCVAYPTSD VI THKE +LY
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_CAPAN5.764e-3463.64Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER_SYNLI1.284e-3367.35Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_GUITH2.190e-3368.37Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER_PHYPA2.861e-3358.82Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER_SILPR4.879e-3349.66Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_SCEQU4.879e-3365.98Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_SCOJA6.373e-3368.75Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_NOSMU6.373e-3366.67Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER_CHLFR6.373e-3367.68Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER1_ANASP6.373e-3366.67Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
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