CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:6..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 64/96 (66.67%), Postives = 82/96 (85.42%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKLI P+G + EF+ PDD YI++ AE+ G+++PYSCRAG+CS+CAG++V+GSVDQSD SFLDD+Q+E+G+VLTCVAYP SD  I THKE EL
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  147 LVKSPA--SLGSTRSVSKA-FGLKCS-SFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            L + PA  SL +  +V +A FGLK   + + + MA YKVKLI P G   EF+ PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +GSVDQSDG+FLD+ Q   GFVLTCVAYP  D  I THKE EL
Sbjct:   14 LPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKLI P G   EFD PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ASYKVKLITPEGAV-EFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EFD PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG++LDD QM +GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EFD PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG++LDD QM +GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I THKE +L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENE-FDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV LI      NE  D  DD YI+D+AE+AG++LPYSCRAGACSTCAG + SG++DQSD SFLDD Q+E G+VLTCVAYPTSDC I TH+E  LY
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGLY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            YKV L  P+GEE   + P+D YI+D+AE+AG++LPYSCRAGACS+CAG++ SG VDQSD SFLDD QM KGFVLTCVAYPTSD  I TH+E+ LY
Sbjct:    1 YKVTLKTPSGEET-IECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY 94          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.046e-32
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  234 MAVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YK+ L+  + G +  FD  +D YI+D+AE+AG+ELPYSCRAGACSTCAG++  GSVDQSD SFLDD+Q+ KG+VLTC+AYP SDC I TH E ELY
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQELY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.046e-32
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G++ EF  PDD YI+D AE+ G++LPYSCRAG+CS+CAG++  G VDQSDGSFLDD+Q+ +G+VLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SAMNI2.422e-3266.67Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER1_SOLLC2.422e-3257.69Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER_TOBAC3.163e-3268.75Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_DATME3.163e-3266.67Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN3.163e-3266.67Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER2_HYONI3.163e-3267.71Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_SPIPL5.395e-3266.67Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_CHLFU5.395e-3268.42Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_PORPU7.046e-3264.65Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_COLES7.046e-3265.63Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
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