CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:6..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVK I P GE+ E +  DD Y++D+AE+AG++LPYSCRAG+CS+CAG++VSGSVDQSD SFLDD Q+ +GFVLTC AYPTSD  I TH+E ++
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD Q+  GFVLTCVAYP SD  I THKE  L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEAL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 3
Query:  222 KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            + S MA YKV L  P+G++   + P D YI+D+AE+AG++LPYSCRAGACS+CAG++ +G+VDQSD SFLDD QM  GFVLTCVAYPTSDC I TH+E  LY
Sbjct:   27 RMSCMA-YKVTLKTPSGDKT-IECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEALY 126          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 3
Query:  234 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L+    G     D  DD YI+D+AE+ G++LPYSCRAGACSTCAG++VSG+VDQSD SFLDD Q+  GFVLTCVAYPTSD  I THKE +LY
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDLY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 3
Query:  234 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L+    G     D  DD YI+D+AE+ G++LPYSCRAGACSTCAG++VSG+VDQSD SFLDD Q+  GFVLTCVAYPTSD  I THKE +LY
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDLY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = 3
Query:  123 APRSKKF-----SLVKSPASLGSTRSVSKA--FGLKCSSFKA-SAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            +PR+  F     SL  +PA        +K    G   SS +   A A Y VKLI P GE  E   PDD YI+D AE+ G++LPYSCRAG+CS+CAG++VSGSVDQSD S+LDD Q+  G+VLTC AYPTSD VI THKE EL
Sbjct:    7 SPRAPAFFFSSSSLRAAPAPTAVALPAAKVGIMGRSASSRRRLRAQATYNVKLITPEGEV-ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 147          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKV LI P G++ EF+ PDD YI+D A +   +LPYSCRAG+CS+CAG++ +GSVDQSDGS+LDD QME G+VLTCVAYPTSD  I THKE EL
Sbjct:    1 ATYKVTLITPEGKQ-EFEVPDDVYILDHAAEEVGDLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G ELPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD Q+  GFVLTCVAYP SD  I THKE +L
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKLI P G   EF+ PDD YI+DSAE+ G +LPYSCRAGACS+CAG++ +G+VDQSD SFLDD Q+ +GFVLTCVAYP S+  I THKE +L
Sbjct:    1 ATYKVKLITPEGPV-EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.965e-31
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENE-FDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV LI      NE  + PDD YI+D AE+ G++LPYSCRAGACSTCAG++  G +DQSD SFLDD Q+E G+VLTCVAYP SDC I TH+E ELY
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEELY 99          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_RAPSA1.570e-3164.58Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_LYCCN2.050e-3166.67Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER_CHLRE2.050e-3163.73Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_SYNP62.050e-3165.66Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE72.050e-3165.66Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_MAIZE2.050e-3154.23Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_ARCLA3.497e-3166.67Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER1_HYONI3.497e-3165.63Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_SOLLY4.567e-3166.67Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_SYNP45.965e-3164.65Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
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