CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  240 VYKVKLIGPN-GEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            +YK++L+    G +   + P D YI+D+AE+ G++LPYSCRAGACSTCAG++V GSVDQSD SFLD++Q+  GF+LTCVAYPTSDCVI TH+E  LY
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEALY 97          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 3
Query:  237 AVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            A YK+ L+    G +  FD  +D YI+D+AE+ G+ELPYSCRAGACSTCAG++  G+VDQSD SFLDD+QM KG+VLTC+AYP SDC I TH E ELY
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQELY 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKLI P+G    FD PD+ YI+D+AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD Q+  GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLITPDGPV-VFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.329e-30
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  234 MAVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            M  +KV LI    G     + PDD YI+D+AE+ G++LPYSCRAGACSTCAG++ +G+VDQSD SFLDD Q++ G+VLTCVAYPTSDC I TH+E +LY
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDLY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P G + EF+ PDD YI+D AE+ G+ LPYSCRAG+CS+CAG++ +G V+QSDGSFLDD Q+E+G+VLTCVAY  SD  I THKE EL
Sbjct:    1 ASYKVKLVTPEGTQ-EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV L  P+G+ N    PDD YI+D AE+ G++LPYSCRAGACSTCAG++VSG     D SFLDD Q++ G++LTCVAYPT DCVI THKE  LY
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 97          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKV L+ P+G +   +  DD YI+D+AE+ GM+LPYSCRAGACS+CAG++ SGSVDQSD SFL+D QME+G+VLTC+AYPT D  I THKE EL
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.960e-30
Identity = 65/96 (67.71%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKLI P+G   EF+ PDD YI+D AE+ G +LPYSCRAGACS+CAG++V GSVDQSD SFLDD Q+  GFVLTCVAYP S+  I THKE  L
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.960e-30
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  198 FGLKCSSFKAS-AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            FGLK  S      MA YKV L+ P G   EF  PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ +GS++Q D SFLDD Q+++G+VLTC AYP SD  I THKE EL
Sbjct:   37 FGLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 58/96 (60.42%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKV L+ P+G +   D PDD Y++D+AE+AG++LPYSCRAG+CS+CAG++ +G+VDQ D SFLDD Q+E GFVLTCVAYP  D  I THKE ++
Sbjct:    1 ATYKVTLVTPSGTQT-IDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDI 95          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_CYACA7.790e-3161.86Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_PORUM1.017e-3063.27Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_PHYAF1.017e-3065.63Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER1_PLEBO1.329e-3061.62Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER_MEDSA1.735e-3064.58Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_APHSA1.735e-3063.27Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_SPIOL1.735e-3064.58Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_SOLLS2.960e-3067.71Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER1_SPIOL2.960e-3058.18Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_PHYES3.866e-3060.42Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
back to top